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AT1G04040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16287169 (2006): extracellular region
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HAD superfamily, subfamily IIIB acid phosphatase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT5G44020.1); Has 1079 Blast hits to 1077 proteins in 335 species: Archae - 0; Bacteria - 592; Metazoa - 2; Fungi - 0; Plants - 364; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G04040-MONOMEReggNOG:ENOG410IDXDeggNOG:ENOG410Y9AUEMBL:AC003027
EMBL:AF370572EMBL:AF428465EMBL:CP002684EnsemblPlants:AT1G04040
EnsemblPlants:AT1G04040.1entrez:839325Gene3D:3.40.50.1000GeneID:839325
GO:GO:0003993GO:GO:0005618GO:GO:0005773GO:GO:0005774
GO:GO:0009505GO:GO:0009506Gramene:AT1G04040.1hmmpanther:PTHR31284
hmmpanther:PTHR31284:SF15HOGENOM:HOG000237598InterPro:IPR005519InterPro:IPR010028
InterPro:IPR014403InterPro:IPR023214KEGG:ath:AT1G04040ncoils:Coil
OMA:MTSSQYKPfam:PF03767PhylomeDB:Q9ZWC4PIR:F86171
PIRSF:PIRSF002674Proteomes:UP000006548RefSeq:NP_563698.1SMR:Q9ZWC4
STRING:3702.AT1G04040.1SUPFAM:SSF56784SwissPalm:Q9ZWC4TAIR:AT1G04040
TIGRfam:TIGR01675TIGRFAMs:TIGR01675TMHMM:TMhelixUniGene:At.10976
UniGene:At.42491UniProt:Q9ZWC4
Coordinates (TAIR10) chr1:-:1042564..1043819
Molecular Weight (calculated) 31097.50 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.36
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRTMFLSLT IASLLVGVVS AGDWNILNQL RGLGSSSSQN GIVSKGIKTD LKGYCESWRI NVEVHNIRKF DVVPQECVSH IKDYMTSSQY KDDVARTVDE
101: VILHFGSMCC SKSKCDGMDA WIFDIDDTLL STIPYHKKNG FFGGEKLNST KFEDWIQKKK APAVPHMKKL YHDIRERGIK IFLISSRKEY LRSATVDNLI
201: QAGYYGWSNL MLRGLEDQQK EVKQYKSEKR KWLMSLGYRV WGVMGDQWSS FAGCPLPRRT FKLPNSIYYV A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)