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AT1G03950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar protein sorting-associated protein 2.3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar protein sorting-associated protein 2.3 (VPS2.3); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1); Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2; Bacteria - 12; Metazoa - 754; Fungi - 334; Plants - 366; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioGrid:24597eggNOG:COG5491eggNOG:KOG3230EMBL:AC003027
EMBL:AY052238EMBL:AY060501EMBL:CP002684EnsemblPlants:AT1G03950
EnsemblPlants:AT1G03950.1entrez:839362GeneID:839362Genevisible:Q941D5
GO:GO:0000815GO:GO:0007034GO:GO:0015031Gramene:AT1G03950.1
hmmpanther:PTHR10476hmmpanther:PTHR10476:SF15HOGENOM:HOG000177218InParanoid:Q941D5
IntAct:Q941D5InterPro:IPR005024KEGG:ath:AT1G03950KO:K12192
ncoils:CoilOMA:AMAAMSKPaxDb:Q941D5Pfam:PF03357
Pfam:Q941D5PhylomeDB:Q941D5PIR:D86170PRIDE:Q941D5
PRO:PR:Q941D5ProteinModelPortal:Q941D5Proteomes:UP000006548Reactome:R-ATH-1632852
Reactome:R-ATH-917729RefSeq:NP_563696.1SMR:Q941D5STRING:3702.AT1G03950.1
TAIR:AT1G03950tair10-symbols:VPS2.3UniGene:At.26425UniProt:Q941D5
Coordinates (TAIR10) chr1:-:1011388..1013212
Molecular Weight (calculated) 23027.60 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.68
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MNIFTKKPNP REVLRESKRE MTQATRGIEK EIGSLQSEEK KLVLEIKRTA KSGNEGATKI LARQLIRLRQ QIANLQGSRA QMRGIATHTQ AMHAHTSVAA
101: GMQGATKAMA AMSKNMDPAK QAKVMREFQK QSAQMDMTTE MMSDSIDDAL DNDEAEDETE DLTNQVLDEI GIDIASQLSS APKGKIGGKK AEDVGSSGID
201: ELEKRLAALR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)