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AT1G03900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : non-intrinsic ABC protein 4
Curator
Summary (TAIR10)
member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.
Computational
Description (TAIR10)
non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
BioGrid:24613eggNOG:ENOG41113PSeggNOG:KOG2500EMBL:AC003027EMBL:AK175162EMBL:AK175560EMBL:AK176343
EMBL:AK176412EMBL:AY042875EMBL:AY072515EMBL:CP002684EnsemblPlants:AT1G03900EnsemblPlants:AT1G03900.1entrez:839378
Gene3D:2.30.29.30GeneID:839378Genevisible:Q681Q7GO:GO:0005576GO:GO:0006858GO:GO:0006897GO:GO:0016020
GO:GO:0042626GO:GO:0055085Gramene:AT1G03900.1HOGENOM:HOG000231188IntAct:Q681Q7InterPro:IPR011993InterPro:IPR012466
iPTMnet:Q681Q7KEGG:ath:AT1G03900OMA:TDPANILPaxDb:Q681Q7Pfam:PF07933Pfam:Q681Q7PhylomeDB:Q681Q7
PIR:G86169PRIDE:Q681Q7PRO:PR:Q681Q7ProteinModelPortal:Q681Q7Proteomes:UP000006548RefSeq:NP_563693.1SMR:Q681Q7
STRING:3702.AT1G03900.1SUPFAM:SSF50729TAIR:AT1G03900tair10-symbols:ATNAP4tair10-symbols:NAP4UniGene:At.23085UniGene:At.67781
UniProt:Q681Q7
Coordinates (TAIR10) chr1:+:991252..992852
Molecular Weight (calculated) 29796.80 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.68
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)