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AT1G03870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 14517339
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinoogalactan 9
Curator
Summary (TAIR10)
fasciclin-like arabinogalactan-protein 9 (Fla9)
Computational
Description (TAIR10)
FASCICLIN-like arabinoogalactan 9 (FLA9); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 13 precursor (TAIR:AT5G44130.1); Has 1005 Blast hits to 985 proteins in 182 species: Archae - 18; Bacteria - 304; Metazoa - 15; Fungi - 9; Plants - 624; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY37eggNOG:ENOG410YJJEEMBL:AC003027EMBL:AF083781EMBL:AF333974EMBL:AK227010EMBL:AY087938
EMBL:CP002684EnsemblPlants:AT1G03870EnsemblPlants:AT1G03870.1entrez:839384ExpressionAtlas:Q9ZWA8Gene3D:2.30.180.10GeneID:839384
Genevisible:Q9ZWA8GO:GO:0005886GO:GO:0031225GO:GO:0046658Gramene:AT1G03870.1hmmpanther:PTHR32077hmmpanther:PTHR32077:SF6
HOGENOM:HOG000237523InParanoid:Q9ZWA8InterPro:IPR000782KEGG:ath:AT1G03870OMA:QASGRDNPaxDb:Q9ZWA8Pfam:PF02469
Pfam:Q9ZWA8Pfscan:PS50213PhylomeDB:Q9ZWA8PIR:D86169PRIDE:Q9ZWA8PRO:PR:Q9ZWA8PROSITE:PS50213
ProteinModelPortal:Q9ZWA8Proteomes:UP000006548RefSeq:NP_563692.1SMART:SM00554SMR:Q9ZWA8STRING:3702.AT1G03870.1SUPFAM:SSF82153
TAIR:AT1G03870tair10-symbols:FLA9UniGene:At.23966UniGene:At.73148UniProt:B3LF88UniProt:Q9ZWA8
Coordinates (TAIR10) chr1:-:982625..983368
Molecular Weight (calculated) 26116.50 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.00
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTRLTLAP LLLIAAVLLA TKATAQPAAP APEPAGPINL TAILEKGGQF TTFIHLLNIT QVGSQVNIQV NSSSEGMTVF APTDNAFQNL KPGTLNQLSP
101: DDQVKLILYH VSPKYYSMDD LLSVSNPVRT QASGRDNGVY GLNFTGQTNQ INVSTGYVET RISNSLRQQR PLAVYVVDMV LLPGEMFGEH KLSPIAPAPK
201: SKSGGVTDDS GSTKKAASPS DKSGSGEKKV GLGFGLGLIV LCLKFLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)