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AT1G03840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.
Computational
Description (TAIR10)
Magpie (MGP); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1); Has 50307 Blast hits to 19551 proteins in 373 species: Archae - 0; Bacteria - 2; Metazoa - 47709; Fungi - 273; Plants - 826; Viruses - 4; Other Eukaryotes - 1493 (source: NCBI BLink).
Protein Annotations
BioGrid:24631eggNOG:COG5048eggNOG:KOG1721EMBL:AC003027
EMBL:AJ630476EMBL:AK227837EMBL:AY568648EMBL:BT006209
EMBL:CP002684EnsemblPlants:AT1G03840EnsemblPlants:AT1G03840.1entrez:839396
ExpressionAtlas:Q9ZWA6Gene3D:3.30.160.60GeneID:839396Genevisible:Q9ZWA6
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0044212GO:GO:0046872hmmpanther:PTHR10593hmmpanther:PTHR10593:SF26
HOGENOM:HOG000237608InParanoid:Q9ZWA6IntAct:Q9ZWA6InterPro:IPR007087
InterPro:IPR013087iPTMnet:Q9ZWA6KEGG:ath:AT1G03840OMA:NQIVEDG
PaxDb:Q9ZWA6Pfam:Q9ZWA6Pfscan:PS50157PhylomeDB:Q9ZWA6
PIR:A86169PRIDE:Q9ZWA6PRO:PR:Q9ZWA6PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q9ZWA6Proteomes:UP000006548RefSeq:NP_001030951.1
RefSeq:NP_171880.1scanprosite:PS00028SMR:Q9ZWA6STRING:3702.AT1G03840.1
SUPFAM:SSF57667TAIR:AT1G03840tair10-symbols:MGPUniGene:At.42516
UniProt:C0SUS5UniProt:Q9ZWA6
Coordinates (TAIR10) chr1:-:967596..970058
Molecular Weight (calculated) 55829.20 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.66
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)