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AT1G03830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.903
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : guanylate-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1); Has 104208 Blast hits to 58378 proteins in 3029 species: Archae - 1549; Bacteria - 18958; Metazoa - 46662; Fungi - 8741; Plants - 6295; Viruses - 432; Other Eukaryotes - 21571 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR6ZeggNOG:KOG2037EMBL:AC003027EMBL:CP002684EnsemblPlants:AT1G03830EnsemblPlants:AT1G03830.1entrez:839398
ExpressionAtlas:Q9ZWA5Gene3D:3.40.50.300GeneID:839398GO:GO:0003924GO:GO:0005525Gramene:AT1G03830.1hmmpanther:PTHR10751
hmmpanther:PTHR10751:SF2HOGENOM:HOG000241586InterPro:IPR003191InterPro:IPR015894InterPro:IPR027417ncoils:CoilPfam:PF02263
Pfam:PF02841PhylomeDB:Q9ZWA5PIR:H86168Proteomes:UP000006548RefSeq:NP_171879.1SMR:Q9ZWA5SUPFAM:0037397
SUPFAM:SSF48340SUPFAM:SSF52540TAIR:AT1G03830UniGene:At.42517UniProt:Q9ZWA5
Coordinates (TAIR10) chr1:-:962128..966622
Molecular Weight (calculated) 112507.00 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.64
Length 991 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNPTDESGR AVQLVYVDEN GKLKTDPEAI GALQKLKGPV AVVSLFGKAL QGKSFIWNQL LSRSIGFEVQ TLHRPCNGDI WMWIEPVKRI SEDGTEYSLV
101: LLDVELEDAK SIPTLGLNDI ALDLSRLLEI RKQDHVGEAK DNTFFELGQF SPMFVQLMMD INSETVEGGE DVTQNSKLKK LRPLLLYGVD ALMKFVSERV
201: RPKQRGDTIV TGPPLAGFTK AFSENVNNNI VPKISSLWQT VEELEGRRAR DTATEVYMSS LERSETPDES MLLEAHNKAV VEALTAFCES SIGNVEVKQK
301: YKRDLWSFFA KALEDHKRVA NVEAYSRCCN AIEDMGKKLW ALPCSQDANI GDMIKALDTA VAEYEASING PMKWQKLSSF LRESVQDILV HRRGNQMDEL
401: MSENSKLKLQ QQSLESTMNL LKKQLEGREK MNKEYQKRYE SAIDDICKLS DQFKNRINDL ESKCKSIHDE HSNLMEVLGS TRLEASEWKR KYEGTLDENG
501: VSNIRVGVDA SITRCSNKLI DWKIKYENTV SEQKAVTEKI AAMEEKLKQA STTEDGLRAE FSRVLDEKEK IITEKAAKLA TLEQQLASTR AELKKSALKV
601: DECSSEAKDV RLQMSLLNEK YESVKSASEL LETETETLKR EKDELDKKCH IHLEELEKLV LRLTNVESEA LEAKKLVDSL KLEAEAARDN ENKLQTSLVE
701: RCIEIDRAKS RIEELEKVCT LNSGEGEASA SKKLVDSMKM EAEASRKNEN KLQTLLEDKC IEIDRAKSRI EGLERDCLKL KYAESEAATV KELVSSMKME
801: VESARSNEKK LQLSLQEKTI EIDRAKGQIE ALERQKMELS ETLETRAKQN EEEVTKWQRI INAEKSKNIR ENLMEKEDSF MVWDEATPMQ RVKRLKVEAA
901: VTCSGSDFAQ ETEEDSVSQE SRKVRTMTPR RCTSSEAGAT SSSTGTGHSK YTMKKLRTEI LEHGFGAELV GLKNPRKRDL VQLYERTVLR K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)