suba logo
AT1G03820.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9NeggNOG:ENOG411054VEMBL:AC003027EMBL:AK176170EMBL:AK176258EMBL:BT010644EMBL:CP002684
EnsemblPlants:AT1G03820EnsemblPlants:AT1G03820.1entrez:839400GeneID:839400Gramene:AT1G03820.1hmmpanther:PTHR35274HOGENOM:HOG000154051
KEGG:ath:AT1G03820OMA:ETMEEYYPIR:G86168Proteomes:UP000006548RefSeq:NP_171878.1STRING:3702.AT1G03820.1TAIR:AT1G03820
UniGene:At.42519UniProt:Q9ZWA4
Coordinates (TAIR10) chr1:-:960008..960676
Molecular Weight (calculated) 25206.40 Da
IEP (calculated) 4.22
GRAVY (calculated) -1.17
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFALKPIF CFIAVFCFIV HNVEAREGKL FFSKFTHIDR PNNKDVALSP APAPGLAQAN GRLGNGSFGP GSGMIPQTKE SWPSSSTTTD EEFEKLMATF
101: DEEKNTKLPE AFEEEEESED SEDLNEPKDK YNNNNNNNGY TYTTNNYNDN GRGYGNEEEK QGMSDTRVME NGKYFYDTRG RNSENTPSRG YENARGNDHT
201: NEFETMEEYY KSLEGSQEEY EP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)