AT1G03780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytoskeleton,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : targeting protein for XKLP2 | ||||||||
| Curator Summary (TAIR10) |
Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. | ||||||||
| Computational Description (TAIR10) |
targeting protein for XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cell cycle regulated microtubule associated protein (InterPro:IPR022021); BEST Arabidopsis thaliana protein match is: Cell cycle regulated microtubule associated protein (TAIR:AT4G22860.2); Has 864 Blast hits to 721 proteins in 133 species: Archae - 2; Bacteria - 40; Metazoa - 457; Fungi - 40; Plants - 113; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:948064..951696 | ||||||||
| Molecular Weight (calculated) | 78653.90 Da | ||||||||
| IEP (calculated) | 9.78 | ||||||||
| GRAVY (calculated) | -0.85 | ||||||||
| Length | 687 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MEATAEESVS TLVTTMVDET YEFLAPRWFD FVNGETEDES RRAELWFQSA LSCAPSPSVP RIKARRSFKV EAMCNFNEAE EETLKDKEPL EPVVPIVSLQ 101: SQPSQAKKAE VAPSKASTVK PSRISSKDAE VNNKTVDASD PTTEPIEDKE NIAPACTPKP PMQFSLGAKS VDLKKQQTAR KIASLLKNPS TLRPKNQSQA 201: KGSHQKSVKG ETNLNNIAST TNLIQENQAI KRQKLDDGKS RQILNPKPAT LLHKTRNGLV NTGFNLCPSV TKHTPKENRK VYVREQIAPF VSTAELMKKF 301: QTSTRDLFVQ NRPKLTLTRP KEPEFVTSQR ARPLRVKSSA ELEEEMLAKI PKFKARPVNK KEFHLQTMAR ANQHAETSSI ASTEVSKQHN DQKHHLTEPK 401: SPVLQTMLRA RPTIAKTTAE LEQEELEKAP KFKAKPLNKK IFESKGEMGI FCNTKKHITI PQEFHFATDE RISRPESVLD IFDKERGAEK EKKFYMELMY 501: KKLGDVKARV PKANPYPYTT DYPVKREMVL INLTCSNSQV PPKPEPKQCT QPEPFQLESL VRHEEEMRRE REERRRMETE EAQKRLFKAQ PVIKEDPIPV 601: PEKVRMPLTE IQEFNLHVEH RAVERADFDH KVSILFSHFS KQKNASITSE IDESILFWNQ IKEKENQYKR YREESEAAKM VCNISNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)