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AT1G03720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.487
vacuole 0.286
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: ovule, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1); Has 2156 Blast hits to 2154 proteins in 385 species: Archae - 2; Bacteria - 56; Metazoa - 1002; Fungi - 0; Plants - 537; Viruses - 67; Other Eukaryotes - 492 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4870eggNOG:KOG1543EMBL:AC002560EMBL:CP002684
EnsemblPlants:AT1G03720EnsemblPlants:AT1G03720.1entrez:839426GeneID:839426
GO:GO:0008234Gramene:AT1G03720.1hmmpanther:PTHR12411HOGENOM:HOG000153082
InterPro:IPR000668InterPro:IPR013128KEGG:ath:AT1G03720OMA:EICWAIA
PANTHER:PTHR12411Pfam:PF00112PhylomeDB:Q9LR55PIR:T00889
Proteomes:UP000006548RefSeq:NP_171868.1SMR:Q9LR55STRING:3702.AT1G03720.1
SUPFAM:SSF54001TAIR:AT1G03720UniGene:At.51472UniProt:Q9LR55
Coordinates (TAIR10) chr1:-:924996..926373
Molecular Weight (calculated) 30906.30 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.37
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLDFFSFVG NGEKRAIHWW QTYKAPKVPN EIKREAATAK KKGPTITPVT QTDDNGVRSK LCYLNCNSYK IEICWAIALT RLLQVIYNIT QEYIAGRLRF
101: DHDDLVVHLK MKKTRGKRPG SMKLKNLKDA INHIAVKGLL KKRESKSKAG SDIGHHTKWN FSMEKCPSKD FIKSKVDISP VAIAFDITHN FQFIGNVSKK
201: SNGLSIYNVS GVDMEDGDAG GHVVLIVGYG YTKENKLFFL IQNSWGEDWG VKGFGRIFID DESKTTLVYP DGPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)