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AT1G03560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 53521 Blast hits to 15193 proteins in 316 species: Archae - 3; Bacteria - 91; Metazoa - 613; Fungi - 824; Plants - 50230; Viruses - 0; Other Eukaryotes - 1760 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC002560EMBL:AK229132
EMBL:CP002684EnsemblPlants:AT1G03560EnsemblPlants:AT1G03560.1entrez:839458
Gene3D:1.25.40.10GeneID:839458Genevisible:Q9LR67GO:GO:0005739
Gramene:AT1G03560.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF372HOGENOM:HOG000242323
InParanoid:Q9LR67InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9LR67
KEGG:ath:AT1G03560OMA:FDAMSTEPaxDb:Q9LR67Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:Q9LR67Pfscan:PS51375
PhylomeDB:Q9LR67PIR:T00902PRIDE:Q9LR67PRO:PR:Q9LR67
PROSITE:PS51375ProteinModelPortal:Q9LR67Proteomes:UP000006548RefSeq:NP_171855.1
SMR:Q9LR67STRING:3702.AT1G03560.1SUPFAM:SSF48452TAIR:AT1G03560
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.42537UniProt:Q9LR67
Coordinates (TAIR10) chr1:-:890428..892410
Molecular Weight (calculated) 74632.50 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.19
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRFYRKPFS VPLLNRPHCS SQSHCLYKNG DFLSDDSKCS PLSSSRTSVR WVFNSSSLPP PEWIEPFNDV SDLVKSNRNL LPSPWVSQIL NLLDGSASME
101: SNLDGFCRKF LIKLSPNFVS FVLKSDEIRE KPDIAWSFFC WSRKQKKYTH NLECYVSLVD VLALAKDVDR IRFVSSEIKK FEFPMTVSAA NALIKSFGKL
201: GMVEELLWVW RKMKENGIEP TLYTYNFLMN GLVSAMFVDS AERVFEVMES GRIKPDIVTY NTMIKGYCKA GQTQKAMEKL RDMETRGHEA DKITYMTMIQ
301: ACYADSDFGS CVALYQEMDE KGIQVPPHAF SLVIGGLCKE GKLNEGYTVF ENMIRKGSKP NVAIYTVLID GYAKSGSVED AIRLLHRMID EGFKPDVVTY
401: SVVVNGLCKN GRVEEALDYF HTCRFDGLAI NSMFYSSLID GLGKAGRVDE AERLFEEMSE KGCTRDSYCY NALIDAFTKH RKVDEAIALF KRMEEEEGCD
501: QTVYTYTILL SGMFKEHRNE EALKLWDMMI DKGITPTAAC FRALSTGLCL SGKVARACKI LDELAPMGVI LDAACEDMIN TLCKAGRIKE ACKLADGITE
601: RGREVPGRIR TVMINALRKV GKADLAMKLM HSKIGIGYER MGSVKRRVKF TTLLETCFDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)