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AT1G03550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.813
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Secretory carrier membrane protein (SCAMP) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 670 Blast hits to 668 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSJNeggNOG:KOG3088EMBL:AC002560EMBL:AY086966EMBL:BT024511EMBL:CP002684EnsemblPlants:AT1G03550
EnsemblPlants:AT1G03550.1entrez:839464GeneID:839464Genevisible:Q9LR68GO:GO:0005886GO:GO:0015031GO:GO:0016021
GO:GO:0030658Gramene:AT1G03550.1hmmpanther:PTHR10687hmmpanther:PTHR10687:SF17HOGENOM:HOG000005901InParanoid:Q9LR68InterPro:IPR007273
KEGG:ath:AT1G03550KO:K19995ncoils:CoilOMA:MYFIGAGPANTHER:PTHR10687PaxDb:Q9LR68Pfam:PF04144
Pfam:Q9LR68PhylomeDB:Q9LR68PRIDE:Q9LR68PRO:PR:Q9LR68Proteomes:UP000006548RefSeq:NP_563686.1STRING:3702.AT1G03550.1
TAIR:AT1G03550TMHMM:TMhelixUniGene:At.42538UniProt:Q9LR68
Coordinates (TAIR10) chr1:-:885851..887778
Molecular Weight (calculated) 31874.80 Da
IEP (calculated) 7.13
GRAVY (calculated) 0.12
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MARHDPNPFA DEEINPFANH TSVPPASNSY LKPLPPEPYD RGATVDIPLD SGNDLRAKEM ELQAKENELK RKEQELKRRE DAIARTGVVI EEKNWPEFFP
101: LIHHDIPNEI PIHLQKIQYV AFTTLLGLVG CLLWNIVAVT VAWIKGEGPT IWLLSIIYFL AGVPGAYVLW YRPLYRATRT DSALKFGAFF FFYVFHIAFC
201: GFAAVAPPVI FQGKSLTGFL PAIELLTTNA AVGIMYFIGA GFFCIETLLN IWVIQQVYAY FRGSGKAAEM KREATKSTLM RAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)