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AT1G03520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1); Has 943 Blast hits to 943 proteins in 116 species: Archae - 0; Bacteria - 40; Metazoa - 553; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2004-MONOMERCAZy:GT14eggNOG:ENOG410XQ7MeggNOG:KOG0799EMBL:AC002560EMBL:AY050837EMBL:AY096750
EMBL:CP002684EMBL:KJ139032EnsemblPlants:AT1G03520EnsemblPlants:AT1G03520.1entrez:839471ExpressionAtlas:Q9LR71GeneID:839471
GO:GO:0005794GO:GO:0008375GO:GO:0016021Gramene:AT1G03520.1hmmpanther:PTHR19297hmmpanther:PTHR19297:SF84HOGENOM:HOG000238323
InterPro:IPR003406OMA:WIMLTRSPfam:PF02485PhylomeDB:Q9LR71PIR:T00906Proteomes:UP000006548RefSeq:NP_171851.1
SMR:Q9LR71STRING:3702.AT1G03520.1TAIR:AT1G03520TMHMM:TMhelixUniGene:At.15601UniProt:Q9LR71
Coordinates (TAIR10) chr1:-:877948..879553
Molecular Weight (calculated) 51506.60 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.36
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKLYRKLVS FRDPFARVKR HVSSHSGFRA FSDRKWLFPF LASLIMSITL LILLISGQFD NFFGEEDQLP VDVVSESNDY FVESDFKQSM NSTADVNPEP
101: PRLAYLISGT KGDSHRMMRT LQAVYHPRNQ YVLHLDLEAP PRERMELAMS VKTDPTFREM ENVRVMAQSN LVTYKGPTMI ACTLQAVSIL LRESLHWDWF
201: LNLSASDYPL VTQDDLLYVF SNLSRNVNFI ENMQLTGWKL NQRAKSIIVD PALYLSKKSD IAWTTQRRSL PNSFRLFTGS AWIMLTRSFL EYCIWGWDNF
301: PRTILMYYTN FVSSPEGYFH TVICNSKEFI NTAIGHDLHY IAWDSPPKQH PRSLSLKDFD NMVKSKAPFA RKFHKNDPAL DKIDKELLGR THRFAPGGWC
401: VGSSANGNDQ CSVQGDDSVL KPGPGSERLQ ELVQTLSSEE FRRKQCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)