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AT1G03370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.859
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2 calcium/lipid-binding and GRAM domain containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2 calcium/lipid-binding and GRAM domain containing protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding and GRAM domain containing protein (TAIR:AT5G50170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRAIeggNOG:ENOG410XS5DEMBL:AC005278EMBL:AY120771EMBL:CP002684EnsemblPlants:AT1G03370EnsemblPlants:AT1G03370.1
entrez:839519Gene3D:2.60.40.150GeneID:839519Genevisible:Q9ZVT9GO:GO:0016021Gramene:AT1G03370.1hmmpanther:PTHR10774
hmmpanther:PTHR10774:SF90HOGENOM:HOG000029734InParanoid:Q9ZVT9InterPro:IPR000008InterPro:IPR004182InterPro:IPR031968iPTMnet:Q9ZVT9
KEGG:ath:AT1G03370OMA:WRMENEAPaxDb:Q9ZVT9Pfam:PF00168Pfam:PF02893Pfam:PF16016Pfam:Q9ZVT9
Pfscan:PS50004PIR:E86165PRIDE:Q9ZVT9PRINTS:PR00360PRO:PR:Q9ZVT9PROSITE:PS50004PROSITE:PS51778
ProteinModelPortal:Q9ZVT9Proteomes:UP000006548RefSeq:NP_171836.3SMART:SM00239SMART:SM00568SMR:Q9ZVT9STRING:3702.AT1G03370.1
SUPFAM:SSF49562TAIR:AT1G03370TMHMM:TMhelixUniGene:At.10872UniGene:At.75389UniProt:Q9ZVT9
Coordinates (TAIR10) chr1:+:830968..834996
Molecular Weight (calculated) 114211.00 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.29
Length 1020 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKLQVRVVEA RNLPAMDLNG FSDPYVRLQL GKQRSRTKVV KKNLNPKWTE DFSFGVDDLN DELVVSVLDE DKYFNDDFVG QVRVSVSLVF DAENQSLGTV
0101: WYPLNPKKKG SKKDCGEILL KICFSQKNSV LDLTSSGDQT SASRSPDLRL ESPIDPSTCA SPSRSDDASS IPQTTFAGRF TQIFQKNAIT ATPTQSSSRS
0201: IDASDLSEIS KPVFSLELSE DESSSTSFEE LLKAMESKDQ GSEPPSNLSG GVVVDQLFMI SPSDLNIVLF ASDSSFYASL TELQGTTEVQ IGPWKAENDG
0301: ESVKRVVSYL KAATKLIKAV KGTEEQTYLK ADGEVYAVLA SVATPDVPFG GTFKVEVLYC ISPGPELPSG EQCSRLVVSW RLNFLQSTMM RGMIENGARQ
0401: GLKDNFEQYA NLLAQSVKPV DSKDIGLNKE QALSSLQAEP QSDWKLAVQY FANFTVLSTF LIGIYVFVHI VFAIPSAIQG LEFNGLDLPD SIGEFVVSGV
0501: LVLQCERVLQ LISRFMQARK QKGSDHGIKA HGDGWLLTVA LIEGVDLAAV DPSGHCDPYI VFTSNGKTRT SSIKFQKSNP QWNEIFEFDA MADPPSVLNV
0601: EVFDFDGPFD EAVSLGHAEV NFVRSNISDL ADVWVPLQGK LAQACQSKLH LRIFLDHTGG GDVVRDYLNK MEKEVGKKIN VRSPQTNSAF QKLFGLPQEE
0701: FLINDFTCHL KRKMPLQGRL FLSARIVGFY ASIFGNKTKF FFLWEDIEEI QVLPPTLASM GSPIVVMTLR PNRGLDARIG AKTHDEEGRL KFHFHSFVSF
0801: NVAQKTIMAL WKAKSLTPEQ KVQAVEEESE QKLQSEESGL FLGVDDVRFS EVFSLTLPVP VSFFMELFGG GEVDRKAMER AGCQSYSCSP WESEKDDVYE
0901: RQTYYRDKRI SRYRGEVTST QQKSLVPEKN GWLVEEVMTL HGVPLGDYFN LHLRYQMEES TSKPKTTYVR VYFGIEWLKS TRHQKRVTKN ILVNLQDRLK
1001: MTFGFLEKEY SSRQQQQQVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)