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AT1G03360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribosomal RNA processing 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1097eggNOG:KOG3013EMBL:AC005278EMBL:AK176232EMBL:BT010533EMBL:CP002684EnsemblPlants:AT1G03360
EnsemblPlants:AT1G03360.1entrez:839521GeneID:839521GO:GO:0000176GO:GO:0000177GO:GO:0000460GO:GO:0000467
GO:GO:0003723GO:GO:0005654GO:GO:0005730GO:GO:0005737GO:GO:0034427GO:GO:0034475GO:GO:0043928
GO:GO:0060149GO:GO:0071034GO:GO:0071035GO:GO:0071038GO:GO:0071049GO:GO:0071051Gramene:AT1G03360.1
hmmpanther:PTHR21321hmmpanther:PTHR21321:SF4HOGENOM:HOG000193685IntAct:Q9ZVT7InterPro:IPR004088InterPro:IPR012340InterPro:IPR022967
InterPro:IPR026699KEGG:ath:AT1G03360KO:K03679OMA:RYKPEIGPANTHER:PTHR21321PaxDb:Q9ZVT7Pfam:PF15985
PhylomeDB:Q9ZVT7PIR:C86165PRO:PR:Q9ZVT7Proteomes:UP000006548Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_171835.1
SMART:SM00316SMR:Q9ZVT7STRING:3702.AT1G03360.1SUPFAM:SSF110324SUPFAM:SSF50249SUPFAM:SSF54791TAIR:AT1G03360
tair10-symbols:ATRRP4tair10-symbols:RRP4UniGene:At.42547UniProt:Q9ZVT7
Coordinates (TAIR10) chr1:+:824653..826179
Molecular Weight (calculated) 36576.00 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.35
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMRKLQLPL SQTQKVRFER AIERLQSLSS SANSDASVIV TDSIPVNHDD AFLKGHGTSE VDGELLATVC GVVERVDKLV YVRTLRARYK PEVGDIVVGR
101: VIEVAQKRWR VELNFNQDGV LMLSSMNMPD GIQRRRTSVD ELNMRNIFVE HDVVCAEVRN FQHDGSLQLQ ARSQKYGKLE KGQLLKVDPY LVKRSKHHFH
201: YVESLGIDLI IGCNGFIWVG EHVEVRDPMA IDDQKDEEMI SSSSTGKEQS HIPLETRQTI CRIGNAIRVL SNLGFTVTLE VIMETVNLSN SKNIDIHDML
301: GSEFHVVVAE NEAERRRTKR KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)