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AT1G03290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast hits to 10183 proteins in 1114 species: Archae - 257; Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675; Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHZCeggNOG:ENOG41120F4EMBL:AC005278EMBL:CP002684EnsemblPlants:AT1G03290EnsemblPlants:AT1G03290.1EnsemblPlants:AT1G03290.2
entrez:838603GeneID:838603Gramene:AT1G03290.1Gramene:AT1G03290.2hmmpanther:PTHR16223hmmpanther:PTHR16223:SF12HOGENOM:HOG000091036
KEGG:ath:AT1G03290ncoils:CoilOMA:QEANMEKPhylomeDB:Q9ZVT0PIR:D86164Proteomes:UP000006548RefSeq:NP_001184898.1
RefSeq:NP_171828.1STRING:3702.AT1G03290.1TAIR:AT1G03290UniGene:At.43158UniProt:Q9ZVT0
Coordinates (TAIR10) chr1:+:807970..810680
Molecular Weight (calculated) 63330.80 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.54
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFGSVYRSL TEIFPQIDAR ILRAVAIEHP KDADEAAAVV LSEIIPSFSS NLFHNFTQSS YKSSGSISER EVEHGLEDVA SRCRPFLGAS GSKASTSSSS
101: SSSETLPLVV TRDHNTRALS TDLVSNMNEL TTLQPNVDPD VCHKDLESEE IQSVKKARGK ENGNYDLFGR CFDVTSNAKI GLDVPEDDIA SVVSLFSLDN
201: VKLASNFWED LGFDITWNQA ENAVSKLVDS TPGDTMTTTQ QGSCFEVGHG STNLVDETSN RSLFSENGDT EIGDAFSTST HVCSVDQLED IIEDAKSNKK
301: NLLTEMETVT NIMREVELKE KDAEKSKEEA ARGGLDTLQK VEELKKMLEH AKEANDMHAG EVYGEKSILA TEVKELENRL LNLSEERNKS LAILDEMRGS
401: LEIRLAAALE LKKTAEKEKK DKEDSALKAL AEQEANMEKV VQESKLLQQE AEENSKLRDF LMDRGQIVDT LQGEISVICQ DVKLLKEKFE NRVPLTKSIS
501: SSFTSSCGSS MKSLVLENPS ERLNGVTETS NNNKFPEAAA FFMNKEKDDC RDLLEDGWDI FDKETEQVVW Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)