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AT1G03250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.723
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 89 Blast hits to 89 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV8BeggNOG:ENOG4112CT4EMBL:AY088022EMBL:AY127012EMBL:BT000532EMBL:CP002684EnsemblPlants:AT1G03250
EnsemblPlants:AT1G03250.1entrez:838557ExpressionAtlas:Q8L3X7GeneID:838557GO:GO:0003676Gramene:AT1G03250.1hmmpanther:PTHR32019
hmmpanther:PTHR32019:SF2HOGENOM:HOG000243651IntAct:Q8L3X7InterPro:IPR001374InterPro:IPR025952Pfam:PF13902PhylomeDB:Q8L3X7
Proteomes:UP000006548RefSeq:NP_563680.1SUPFAM:SSF82708TAIR:AT1G03250UniGene:At.43403UniProt:Q8L3X7
Coordinates (TAIR10) chr1:-:793576..795159
Molecular Weight (calculated) 27721.10 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.50
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATNVMRRD ESLLIDPQRG DTSVSRGLSL EKKIEALESL AGQVSNRRSR RWLNDRILME LVPRLDAQEI RGLFAPPPWG DDVPPSAFSL TNVGEWDKFR
101: NIDMDKEANI MDSLNRSSVR QKGSVDGDKI AVLNAWRRID CRTRDALRRS FLPELIEGYE SCISHFIEEG GEGDVLELKV QDPFHRLLLH GVCEYHNLVS
201: TTATEQIGRI AMKTTSIKWK KSGDSGEKPS ISLAHFLRMS KEGAW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)