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AT1G03170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3049)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT4G02810.1); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9EeggNOG:ENOG4110553EMBL:AC005278EMBL:AK118027
EMBL:AY087507EMBL:CP002684EnsemblPlants:AT1G03170EnsemblPlants:AT1G03170.1
entrez:839563GeneID:839563Genevisible:Q8GXU9GO:GO:0010075
Gramene:AT1G03170.1hmmpanther:PTHR33155hmmpanther:PTHR33155:SF3HOGENOM:HOG000090645
InParanoid:Q8GXU9InterPro:IPR021410KEGG:ath:AT1G03170OMA:REPKPML
PaxDb:Q8GXU9Pfam:PF11250Pfam:Q8GXU9PhylomeDB:Q8GXU9
PIR:A86163PRIDE:Q8GXU9PRO:PR:Q8GXU9Proteomes:UP000006548
RefSeq:NP_563678.1STRING:3702.AT1G03170.1TAIR:AT1G03170UniGene:At.42557
UniProt:Q8GXU9
Coordinates (TAIR10) chr1:+:769805..770527
Molecular Weight (calculated) 27256.90 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.87
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVVCQPQI NESFYQKDDM GGLSFLQSMS DITSIAQTKE DKAYVHPMEK RSVSKLNEKS LEMCTESLGT ETGSESGDEL SLLAFEATTT PRAPPRQLKP
101: QEDTNLPDKT PPMSRNNSFP PPIKFVEDSK YNRMVRWLGE DGRIVVQAIR VSSPPSCFVS ERGEGRLRLI LTSESSLLSH NHEEEEEEET EEGIDEETSE
201: NLEGKSGNKK FSRFSRRCKE NGREPKPMLT WKQQQFWVAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)