suba logo
AT1G03160.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21531424 (2011): plastid
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FZO-like
Curator
Summary (TAIR10)
A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.
Computational
Description (TAIR10)
FZO-like (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding; INVOLVED IN: vegetative to reproductive phase transition of meristem, thylakoid membrane organization; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), GTP-binding protein, HSR1-related (InterPro:IPR002917); Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53; Bacteria - 3501; Metazoa - 428; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Protein Annotations
EC:3.6.5.-eggNOG:COG0699eggNOG:KOG0448EMBL:AC005278EMBL:AC006550EMBL:AK176297EMBL:AK227660
EMBL:BT010575EMBL:CP002684EMBL:DQ462573EnsemblPlants:AT1G03160EnsemblPlants:AT1G03160.1EnsemblPlants:AT1G03160.2entrez:839566
ExpressionAtlas:Q1KPV0Gene3D:3.20.20.70Gene3D:3.40.50.300GeneID:839566Genevisible:Q1KPV0GO:GO:0004789GO:GO:0005525
GO:GO:0009228GO:GO:0009507GO:GO:0009535GO:GO:0009706GO:GO:0010027GO:GO:0010228GO:GO:0016021
GO:GO:0016787GO:GO:0031969hmmpanther:PTHR11649hmmpanther:PTHR11649:SF36HOGENOM:HOG000241410InParanoid:Q1KPV0InterPro:IPR003733
InterPro:IPR006073InterPro:IPR013785InterPro:IPR022998InterPro:IPR027417KEGG:00730+2.5.1.3KEGG:ath:AT1G03160ncoils:Coil
OMA:YESISWRPaxDb:Q1KPV0Pfam:PF01926Pfam:PF02581PhylomeDB:Q1KPV0PIR:G86162PIR:H86162
PRIDE:Q1KPV0PRO:PR:Q1KPV0ProteinModelPortal:Q1KPV0Proteomes:UP000006548RefSeq:NP_001077452.1RefSeq:NP_171815.3STRING:3702.AT1G03160.1
SUPFAM:SSF51391SUPFAM:SSF52540TAIR:AT1G03160tair10-symbols:FZLUniGene:At.44048unipathway:UPA00060UniProt:Q1KPV0
Coordinates (TAIR10) chr1:+:761321..766053
Molecular Weight (calculated) 100736.00 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.10
Length 912 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTLISHRQC VTSPFLISAA SPPFPGRCFK LSSFTPPRHR RFSSLSIRNI SHESADQTSS SRPRTLYPGG YKRPELAVPG LLLRLDADEV MSGNREETLD
101: LVDRALAKSV QIVVIDGGAT AGKLYEAACL LKSLVKGRAY LLIAERVDIA SAVGASGVAL SDEGLPAIVA RNTLMGSNPD SVLLPLVARI VKDVDSALIA
201: SSSEGADFLI LGSGEEDTQV ADSLLKSVKI PIYVTCRGNE EAKEELQLLK SGVSGFVISL KDLRSSRDVA LRQSLDGAYV VNNHETQNMN ELPEKKNSAG
301: FIKLEDKQKL IVEMEKSVLR ETIEIIHKAA PLMEEVSLLI DAVSRIDEPF LMVIVGEFNS GKSTVINALL GKRYLKEGVV PTTNEITFLC YSDLESEEQQ
401: RCQTHPDGQY VCYLPAPILK DINIVDTPGT NVILQRQQRL TEEFVPRADL LVFVLSADRP LTESEVAFLR YTQQWKKKFV FILNKSDIYR DARELEEAIS
501: FVKENTRKLL NTENVILYPV SARSALEAKL STASLVGRDD LEIADPGSNW RVQSFNELEK FLYSFLDSST ATGMERIRLK LETPMAIAER LLSSVEALVR
601: QDCLAAREDL ASADKIISRT KEYALKMEYE SISWRRQALS LIDNARLQVV DLIGTTLRLS SLDLAISYVF KGEKSASVAA TSKVQGEILA PALTNAKELL
701: GKYAEWLQSN TAREGSLSLK SFENKWPTYV NSKTQLGIDT YDLLQKTDKV SLKTIQNLSA GTTSKRLEQD IREVFFVTVG GLGAAGLSAS LLTSVLPTTL
801: EDLLALGLCS AGGYVAIANF PYRRQAIIGK VNKVADALAQ QLEDAMQKDL SDATSNLVNF VNIVAKPYRE EAQLRLDRLL GIQKELSDIR SKLQLLQVDI
901: DNLHVSRDEM RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)