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AT1G03140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : splicing factor Prp18 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54590.1); Has 624 Blast hits to 613 proteins in 206 species: Archae - 0; Bacteria - 5; Metazoa - 235; Fungi - 175; Plants - 58; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR90eggNOG:KOG2808EMBL:AC006550EMBL:AF360230EMBL:AY051020EMBL:CP002684EnsemblPlants:AT1G03140
EnsemblPlants:AT1G03140.1entrez:839567GeneID:839567GO:GO:0005681GO:GO:0008380Gramene:AT1G03140.1hmmpanther:PTHR13007
hmmpanther:PTHR13007:SF19HOGENOM:HOG000242389IntAct:Q9SA55InterPro:IPR004098InterPro:IPR014906KEGG:ath:AT1G03140KO:K12817
ncoils:CoilOMA:ERCGYKPPfam:PF02840Pfam:PF08799PhylomeDB:Q9SA55PIR:E86162Proteomes:UP000006548
RefSeq:NP_563676.1SMART:SM00500SMR:Q9SA55STRING:3702.AT1G03140.1SUPFAM:0036629SUPFAM:0053824SUPFAM:SSF158230
TAIR:AT1G03140UniGene:At.11122UniProt:Q9SA55
Coordinates (TAIR10) chr1:-:754471..756223
Molecular Weight (calculated) 47884.20 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.80
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)