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AT1G03060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Beige/BEACH domain ;WD domain, G-beta repeat protein
Curator
Summary (TAIR10)
Encodes a WD/BEACH domain protein involved in cell morphogenesis.
Computational
Description (TAIR10)
SPIRRIG (SPI); FUNCTIONS IN: binding; INVOLVED IN: signal transduction, multidimensional cell growth, vacuole organization, trichome morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain ;WD domain, G-beta repeat protein (TAIR:AT4G02660.1); Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4; Bacteria - 1376; Metazoa - 3669; Fungi - 1335; Plants - 868; Viruses - 0; Other Eukaryotes - 1239 (source: NCBI BLink).
Protein Annotations
DIP:DIP-61571NeggNOG:ENOG410XNQCeggNOG:KOG1786eggNOG:KOG1788EMBL:AC006550EMBL:CP002684EnsemblPlants:AT1G03060
EnsemblPlants:AT1G03060.1entrez:839323Gene3D:1.10.1540.10Gene3D:1.25.10.10Gene3D:2.130.10.10Gene3D:2.30.29.40Gene3D:2.60.120.200
GeneID:839323Genevisible:F4HZB2GO:GO:0000932GO:GO:0007033GO:GO:0009737GO:GO:0009825GO:GO:0010090
GO:GO:0033962GO:GO:0071472GO:GO:1904580Gramene:AT1G03060.1hmmpanther:PTHR13743hmmpanther:PTHR13743:SF84HOGENOM:HOG000030032
InParanoid:F4HZB2IntAct:F4HZB2InterPro:IPR000409InterPro:IPR001680InterPro:IPR011989InterPro:IPR011993InterPro:IPR013320
InterPro:IPR015943InterPro:IPR016024InterPro:IPR017986InterPro:IPR019775InterPro:IPR023362iPTMnet:F4HZB2KEGG:ath:AT1G03060
OMA:MAPFASWPaxDb:F4HZB2Pfam:PF00400Pfam:PF02138Pfam:PF14844Pfscan:PS50082Pfscan:PS50197
Pfscan:PS50294PIR:D86161PRIDE:F4HZB2PROSITE:PS00678PROSITE:PS50082PROSITE:PS50197PROSITE:PS50294
PROSITE:PS51783ProteinModelPortal:F4HZB2Proteomes:UP000006548RefSeq:NP_171805.1scanprosite:PS00678SMART:SM00320SMART:SM01026
STRING:3702.AT1G03060.1SUPFAM:SSF48371SUPFAM:SSF49899SUPFAM:SSF50729SUPFAM:SSF50978SUPFAM:SSF81837TAIR:AT1G03060
tair10-symbols:SPIUniGene:At.46388UniGene:At.69595UniProt:F4HZB2
Coordinates (TAIR10) chr1:-:712971..726891
Molecular Weight (calculated) 400916.00 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.15
Length 3601 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKWATLLKDI KEKVGLAQSS DSDPFPVDLT APPSSSSSSS SPSFTYPSSS SLHHFNFSPS SRDNHELELD FKRLWEEFRS SSSEKEKEAA LNLTVDIFCR
0101: LVKRHANVDQ LVTMLVETHI FSFVIGRAFV TDIEKLKIGS KTRSLNVEKV LRFFSDVTKE GFSPGANLLT AVEVLVSGPI DKQSLLDSGI FCCLIHVLIA
0201: LLAYDELSKS KITGDLEVVS AEKDAGYIVL QTRRLEVEGS VVHIMKALAS NPSAAQSLIE DDSLESLFNM VANGSITVFS QYKEGLVPLH NIQLHRHAMQ
0301: ILGLLLVNDN GSTARYIRKH HLIKVLLMAV KEFDPSCGDS AYTMGIVDLL LECVELSYRP EAGGVRLRED IRNAHGYHFL VQFALVLSSL PKNPIFVSSN
0401: HDSGSDDPEV FHDGENTNST ENADFSSQNF APSLSRLLDV LVTLAQTGPA EPSVGRASRS SQTKPTGHSR SRTSSVDSIY DETWEQGSGK VKDLEAVQML
0501: QDIFLKAENK DLQAEVLNRM FKIFSSHVEN YRLCQELRTV PLLVLNMAGF PSSLQDIILK ILEYAVTVVN CVPEQELLSL CCLLQQPITS QLKHTILSFF
0601: VKLISFDQQY KKVLREVGVL EVLQDDLKQH KLLIGPDQYS GVSSHSDRKP SSGSFRKNLD TKDAIISSPK LMESGSGKLP VFEVDNTITV GWDCLISLLK
0701: KAEANQSSFR AANGVAIILP FLISDAHRSG VLRILSCLIT EDTKQVHHDE LGAVVDLLKS GMVTGISGHQ YKLHDDAKCD TMGALWRIVG VNGSAQRVFG
0801: EATGFSLLLT TLHTFQGKRE HMDESDLTVY IKLFKYLFRL MTAAVCENAV NRMKLHAVIT SQTFFELLAE SGLLCVELER QVIQLLLELA LEVVVPPFLT
0901: SESTALATIP ENENTTFVVT TPSGQFNPDK ERIYNAGAVR VLIRSLLLFS PKMQLEFLRL LESLARASPF NQENLTSIGC VELLLEIIYP FLAGSSPFLS
1001: YALKIVEILG AYRLSPSELR MLFRYVLQMR IMNSGHAIVG MMEKLILMED TALEHLSLAP FVELDMSKTG HASVQVSLGE RSWPPAAGYS FVCWFQFRNF
1101: LTTQGKESEA SKAGGSSKTR MTSAQQHEQN IFRMFSVGAV SNESPFYAEL YFQEDGILTL ATSNSHSLSF SGLEIEEGRW HHLAVVHSKP NALAGLFQAS
1201: VAYVYLDGKL RHTGKLGYSP SPVGKSLQVT VGTPATCARV SDLTWKTRSC YLFEEVLTSG CIGFMYILGR GYKGLFQDAD LLRFVPNQAC GGGSMAILDS
1301: LDTDMTSSSN GQKFDGSNRQ GDSKADGSGI VWDLERLGNL AFQLPGKKLI FAFDGTCSEF IRASGNFSLL NLVDPLSAAA SPIGGIPRFG RLVGNVSICR
1401: QSVIGDTIRP VGGMTVVLAL VEAAESRNML HMALSLLACA LHQNPQNVKD MQTIRGYHLL ALFLRPKMTL FDMQSLEIFF QIAACEALFS EPKKLESVQS
1501: NITMPPTETI FENSYEDLSL SRFRYDSSSV GSHGDMDDFS VPKDSFSHLS ELETDIPVET SNCIVLSNAD MVEHVLLDWT LWVTSPVSIQ IALLGFLENL
1601: VSMHWYRNHN LTILRRINLV EHLLVTLQRG DVEVPVLEKL VVLLGCILED GFLTSELENV VRFVIMTFNP PEVKSRSSLL RESMGKHVIV RNMLLEMLID
1701: LQVTIKAEDL LELWHKIVSS KLITYFLDEA VHPTSMRWIM TLLGVCLASS PNFSLKFRTS GGYQGLLRVL QNFYDSPDIY YILFCLIFGK PVYPRLPEVR
1801: MLDFHALVPN DGSYVELKFI ELLDSVVAMA KSTYDRLIMQ SMLAHQSGNL SQVSASLVAE LIEGAEMTGE LQGEALMHKT YAARLMGGEA SAPAAATSVL
1901: RFMVDLAKMC PQFSTACRRA EFVENCADLY FSCVRAAYAV KMAKQLSVKA EEKHINDADD SGSQGSLPHD QDQSTKTSIS VGSFPQGQVS LGSEDMSLPA
2001: NYVVNDKMEN ILPPPTQDTS KSLQGVEDVK KQDDHHVGPS ASSERDFQDF TGNPVQVQAT DSQSSASFPM IESPLLSEKS SLKVSFTPSP SPVVALASWL
2101: GSNYNESKSS TLGSPSLESY VSVNEVDASS ERKSGSQGSS AANAFFTVSP KLLLETDETG YGGGPCSAGA SAVLDFMAEA LADLVTEQIK AVPVLESILE
2201: MVPFYVDPES VLVFQGLCLS RVMNYLERRL LRDDEEDEKK LDKAKWSVNL DAFCWMIVDR VYMGAFSQPA GVLRALEFLL SMLQLANKDG RVEEVTPSGK
2301: GLLSLGRATR QLDAYVHSIL KNTNRMVLYC FLPSFLITIG EEDLLSQLGL LVESKKRPSP NPATDESGID ISTVLQLLVA NRRIIFCPSN LDTDLNCCLC
2401: VNLISLLLDQ RKSVQNMSLD IVKYLLVHRR SALEDLLVTK PNQGQNFDVL HGGFDKLLTG NLPEFFKWLE SSDKIINKVL EQCAAIMWVQ YIAGSAKFPG
2501: VRIKGMEGRR KREMGRKSRD MSKLDLKHWD QLNERRYALE VLRDAMSTEL RVVRQNKYGW ILHAESEWQT HLQQLVHERG IFPMRKSKGT EDPEWQLCPI
2601: EGPYRMRKKL ERCKLKIDSI QNVLDGKLEL GEIELPKVKN EDGPVISDTD SEPPFLLSEL YDESFLKESD DFKDVASARN GWNDDRASST NEASLHSALD
2701: FGGKSSIASV PITDTTHVKS ETGSPRHSSS AKMDETNGRE EKSEKELNDD GEYLIRPYLE HLEKIRFRYN CERVVDLDKH DGIFLIGEFC LYVIENFYID
2801: EDGCICEKEC EDELSVIDQA LGVKKDVSGS SDFHSKSSTS WTTTVKTGAV GGRAWAYGGG AWGKEKMCMT GNLPHPWRMW KLNNVHEILK RDYQLRPVAI
2901: EIFSMDGCND LLVFHKKERE EVFKNLVAMN LPRNSMLDTT ISGSAKQESN EGGRLFKLMA KSFSKRWQNG EISNFQYLMH LNTLAGRGYS DLTQYPVFPW
3001: VLADYDSESL DFSDPKTFRK LHKPMGCQTP EGEEEFRKRY ESWDDPEVPK FHYGSHYSSA GIVLFYLIRL PPFSSENQKL QGGQFDHADR LFNSIKDTWL
3101: SAAGKGNTSD VKELIPEFFY MPEFLENRFS LDLGEKQSGE KVGDVFLPPW ARGSVREFIL KHREALESDY VSENLHHWID LIFGYKQRGK AAEEAVNVFY
3201: HYTYEGNVDI DAVTDPAMKA SILAQINHFG QTPKQLFPKA HVKRRTDRKI PLHPLKHSMH LVPHEIRKCS SSISQIITFH DKVLVAGANC FLKPRGYTKY
3301: ITWGFPDRSL RFMSYDQDKL LSTHENLHES NQIQCAGVSH DGRIVVTGAE DGLVCVWRVS KDGPRGSRRL RLEKALCAHT AKVTCLRVSQ PYMMIASGSD
3401: DCTVIIWDLS SLSFVRQLPD FPVPISAIYI NDLTGEIVTA AGTVLAVWSI NGDCLAVANT SQLPSDSVLS VTGSTSSDWL ETSWYVTGHQ SGAVKVWRMI
3501: HCTDPVSAES KTSSSNRTGG LNLGDQVPEY KLILHKVLKF HKQPVTALHL TSDLKQLLSG DSAGQLLSWT VPDETLRASM KQASLKQASL KQASLKQASS
3601: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)