AT1G02910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 201 Blast hits to 200 proteins in 49 species: Archae - 3; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:655749..658125 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50741.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVATAPSLN RHFPRRISNL YSRVKQRRPW LPPGDATLFN SRRNWDSHLF VYASSSSSPS SSPPSPNSPT DDLTAELCVN TGLDLFKRGR VKDALVQFET 101: ALSLAPNPIE SQAAYYNKAC CHAYRGEGKK AVDCLRIALR DYNLKFATIL NDPDLASFRA LPEFKELQEE ARLGGEDIGD NFRRDLKLIS EVRAPFRGVR 201: KFFYFAFAAA AGISMFFTVP RLVQAIRGGD GAPNLLETTG NAAINIGGIV VMVSLFLWEN KKEEEQMVQI TRDETLSRLP LRLSTNRVVE LVQLRDTVRP 301: VILAGKKETV TLAMQKADRF RTELLRRGVL LVPVVWGERK TPEIEKKGFG ASSKAATSLP SIGEDFDTRA QSVVAQSKLK GEIRFKAETV SPGEWERWIR 401: DQQISEGVNP GDDVYIILRL DGRVRRSGRG MPDWAEISKE LPPMDDVLSK LER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)