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AT1G02820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant 3 (LEA3) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant 3 (LEA3) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development, response to stress; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: senescence-associated gene 21 (TAIR:AT4G02380.1); Has 144 Blast hits to 139 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J38NeggNOG:ENOG410ZEWFEMBL:AC009525EMBL:AK176747EMBL:AY088824EMBL:BT024641EMBL:CP002684
EnsemblPlants:AT1G02820EnsemblPlants:AT1G02820.1entrez:839304GeneID:839304GO:GO:0005829GO:GO:0006950Gramene:AT1G02820.1
hmmpanther:PTHR33509hmmpanther:PTHR33509:SF5HOGENOM:HOG000237812InterPro:IPR004926KEGG:ath:AT1G02820OMA:EACSAWAPfam:PF03242
PhylomeDB:Q9SRX6PIR:D86158Proteomes:UP000006548RefSeq:NP_171781.1STRING:3702.AT1G02820.1TAIR:AT1G02820UniGene:At.42577
UniProt:Q9SRX6
Coordinates (TAIR10) chr1:-:623933..624304
Molecular Weight (calculated) 9827.62 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.49
Length 91 amino acids
Sequence (TAIR10)
(BLAST)
1: MARSLANAKI QSVFGSEKLS NAVFRRGFAA AAKTALDGSV STAEMKKRAG EASSEKAPWV PDPKTGYYRP ETVSEEIDPA ELRAILLNNK Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)