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AT1G02813.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, cauline leaf, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02360.1); Has 501 Blast hits to 500 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 500; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G02813EnsemblPlants:AT1G02813.1entrez:839360Gene3D:2.30.240.10GeneID:839360Gramene:AT1G02813.1
hmmpanther:PTHR31676hmmpanther:PTHR31676:SF4InParanoid:F4HXM8InterPro:IPR007493KEGG:ath:AT1G02813OMA:WINISEVPaxDb:F4HXM8
Pfam:PF04398PRIDE:F4HXM8ProteinModelPortal:F4HXM8Proteomes:UP000006548RefSeq:NP_563663.1SMR:F4HXM8STRING:3702.AT1G02813.1
SUPFAM:0051283SUPFAM:SSF141562TAIR:AT1G02813UniGene:At.42578UniProt:F4HXM8
Coordinates (TAIR10) chr1:+:620773..621222
Molecular Weight (calculated) 16849.40 Da
IEP (calculated) 9.42
GRAVY (calculated) 0.12
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIFIIFLLL LSTSVSVSGQ KKRSVYQVLE NYTLPRGILP EGVHDYDLNR RTGVFKVRFN TTCQFSIDSY KVKYKPVISG IITRGRVIRL IGVSVKVLFF
101: WINISEVSRD GDDVEFFVGA ASEEFSSKYF VDSPKCGCGF NCYRPISSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)