AT1G02730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase-like D5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase-like D5 (CSLD5); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3375 Blast hits to 3003 proteins in 709 species: Archae - 13; Bacteria - 1269; Metazoa - 102; Fungi - 19; Plants - 1879; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:594697..598473 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132594.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.82 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1181 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVKSAASQSP SPVTITVTPC KGSGDRSLGL TSPIPRASVI TNQNSPLSSR ATRRTSISSG NRRSNGDEGR YCSMSVEDLT AETTNSECVL SYTVHIPPTP 0101: DHQTVFASQE SEEDEMLKGN SNQKSFLSGT IFTGGFKSVT RGHVIDCSMD RADPEKKSGQ ICWLKGCDEK VVHGRCECGF RICRDCYFDC ITSGGGNCPG 0201: CKEPYRDIND DPETEEEDEE DEAKPLPQMG ESKLDKRLSV VKSFKAQNQA GDFDHTRWLF ETKGTYGYGN AVWPKDGYGI GSGGGGNGYE TPPEFGERSK 0301: RPLTRKVSVS AAIISPYRLL IALRLVALGL FLTWRVRHPN REAMWLWGMS TTCELWFALS WLLDQLPKLC PVNRLTDLGV LKERFESPNL RNPKGRSDLP 0401: GIDVFVSTAD PEKEPPLVTA NTILSILAVD YPVEKLACYL SDDGGALLTF EALAQTASFA STWVPFCRKH NIEPRNPEAY FGQKRNFLKN KVRLDFVRER 0501: RRVKREYDEF KVRINSLPEA IRRRSDAYNV HEELRAKKKQ MEMMMGNNPQ ETVIVPKATW MSDGSHWPGT WSSGETDNSR GDHAGIIQAM LAPPNAEPVY 0601: GAEADAENLI DTTDVDIRLP MLVYVSREKR PGYDHNKKAG AMNALVRTSA IMSNGPFILN LDCDHYIYNS MALREGMCFM LDRGGDRICY VQFPQRFEGI 0701: DPNDRYANHN TVFFDVSMRA LDGLQGPMYV GTGCIFRRTA LYGFSPPRAT EHHGWLGRRK VKISLRRPKA MMKKDDEVSL PINGEYNEEE NDDGDIESLL 0801: LPKRFGNSNS FVASIPVAEY QGRLIQDLQG KGKNSRPAGS LAVPREPLDA ATVAEAISVI SCFYEDKTEW GKRVGWIYGS VTEDVVTGYR MHNRGWRSIY 0901: CVTKRDAFRG TAPINLTDRL HQVLRWATGS VEIFFSRNNA IFATRRMKFL QRVAYFNVGM YPFTSLFLIV YCILPAISLF SGQFIVQSLD ITFLIYLLSI 1001: TLTLCMLSLL EIKWSGITLH EWWRNEQFWV IGGTSAHPAA VLQGLLKVIA GVDISFTLTS KSSAPEDGDD EFADLYVVKW SFLMVPPLTI MMVNMIAIAV 1101: GLARTLYSPF PQWSKLVGGV FFSFWVLCHL YPFAKGLMGR RGRVPTIVFV WSGLLSIIVS LLWVYINPPS GKQDYMQFQF P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)