AT1G02720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.923 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : galacturonosyltransferase 5 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with putative galacturonosyltransferase activity. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 2014 Blast hits to 2000 proteins in 469 species: Archae - 0; Bacteria - 946; Metazoa - 269; Fungi - 2; Plants - 729; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:592115..593200 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41158.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHWITRFSAF FSAALAMILL SPSLQSFSPA AAIRSSHPYA DEFKPQQNSD YSSFRESPMF RNAEQCRSSG EDSGVCNPNL VHVAITLDID YLRGSIAAVN 101: SILQHSMCPQ SVFFHFLVSS ESQNLESLIR STFPKLTNLK IYYFAPETVQ SLISSSVRQA LEQPLNYARN YLADLLEPCV KRVIYLDSDL VVVDDIVKLW 201: KTGLGQRTIG APEYCHANFT KYFTGGFWSD KRFNGTFKGR NPCYFNTGVM VIDLKKWRQF RFTKRIEKWM EIQKIERIYE LGSLPPFLLV FAGHVAPISH 301: RWNQHGLGGD NVRGSCRDLH SGPVSLLHWS GSGKPWLRLD SKLPCPLDTL WAPYDLYKHS H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)