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AT1G02690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : importin alpha isoform 6
Curator
Summary (TAIR10)
Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.
Computational
Description (TAIR10)
importin alpha isoform 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G02150.1); Has 4537 Blast hits to 3341 proteins in 295 species: Archae - 4; Bacteria - 37; Metazoa - 1783; Fungi - 593; Plants - 1355; Viruses - 0; Other Eukaryotes - 765 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5064eggNOG:KOG0166EMBL:AC022521EMBL:AY070068EMBL:AY096437EMBL:CP002684EnsemblPlants:AT1G02690
EnsemblPlants:AT1G02690.1entrez:839517ExpressionAtlas:Q9FWY7Gene3D:1.25.10.10GeneID:839517Genevisible:Q9FWY7GO:GO:0005635
GO:GO:0005737GO:GO:0006606GO:GO:0008565hmmpanther:PTHR23316hmmpanther:PTHR23316:SF29HOGENOM:HOG000167616IntAct:Q9FWY7
InterPro:IPR000225InterPro:IPR002652InterPro:IPR011989InterPro:IPR016024InterPro:IPR024931InterPro:IPR032413KEGG:ath:AT1G02690
PaxDb:Q9FWY7Pfam:PF00514Pfam:PF01749Pfam:PF16186Pfam:Q9FWY7Pfscan:PS50176Pfscan:PS51214
PhylomeDB:Q9FWY7PIR:A86157PIRSF:PIRSF005673PRIDE:Q9FWY7PRO:PR:Q9FWY7PROSITE:PS50176PROSITE:PS51214
ProteinModelPortal:Q9FWY7Proteomes:UP000006548RefSeq:NP_171769.1SMART:SM00185SMR:Q9FWY7STRING:3702.AT1G02690.2SUPFAM:SSF48371
TAIR:AT1G02690tair10-symbols:IMPA-6UniGene:At.27815UniProt:Q9FWY7
Coordinates (TAIR10) chr1:+:584397..587036
Molecular Weight (calculated) 59392.20 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.36
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)