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AT1G02680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 13 (TAF13); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding; INVOLVED IN: transcription initiation, transcription from RNA polymerase II promoter; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IID, 18kDa subunit (InterPro:IPR003195), Histone-fold (InterPro:IPR009072); Has 554 Blast hits to 554 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 284; Plants - 44; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:23202eggNOG:COG5248eggNOG:KOG3901EMBL:AB493426EMBL:AC022521EMBL:AK175906EMBL:AK175966
EMBL:AK176854EMBL:AK221393EMBL:AY463615EMBL:BT010482EMBL:CP002684EnsemblPlants:AT1G02680EnsemblPlants:AT1G02680.1
entrez:837962Gene3D:1.10.20.10GeneID:837962Genevisible:Q6NQH4GO:GO:0003677GO:GO:0003712GO:GO:0005634
GO:GO:0005669GO:GO:0005886GO:GO:0006357GO:GO:0006366GO:GO:0009793GO:GO:0009960GO:GO:0048316
Gramene:AT1G02680.1hmmpanther:PTHR11380HOGENOM:HOG000237827InParanoid:Q6NQH4IntAct:Q6NQH4InterPro:IPR003195InterPro:IPR009072
KEGG:ath:AT1G02680KO:K03127ncoils:CoilOMA:MALEDIHPANTHER:PTHR11380PaxDb:Q6NQH4Pfam:PF02269
Pfam:Q6NQH4PhylomeDB:Q6NQH4PRIDE:Q6NQH4PRO:PR:Q6NQH4ProteinModelPortal:Q6NQH4Proteomes:UP000006548Reactome:R-ATH-674695
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_171768.2SMR:Q6NQH4STRING:3702.AT1G02680.1
SUPFAM:SSF47113TAIR:AT1G02680tair10-symbols:TAF13UniGene:At.42586UniProt:Q6NQH4
Coordinates (TAIR10) chr1:+:581084..581919
Molecular Weight (calculated) 14255.00 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.60
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)