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AT1G02640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-xylosidase 2
Curator
Summary (TAIR10)
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational
Description (TAIR10)
beta-xylosidase 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 1 (TAIR:AT5G49360.1); Has 9578 Blast hits to 8300 proteins in 1224 species: Archae - 65; Bacteria - 5802; Metazoa - 17; Fungi - 1614; Plants - 527; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G02640-MONOMERCAZy:GH3EC:3.2.1.-eggNOG:COG1472
eggNOG:ENOG410IE0IeggNOG:ENOG410JBDHEMBL:AC022521EMBL:AF367266
EMBL:AY143952EMBL:CP002684EnsemblPlants:AT1G02640EnsemblPlants:AT1G02640.1
entrez:837940Gene3D:3.20.20.300Gene3D:3.40.50.1700GeneID:837940
Genevisible:Q94KD8GO:GO:0005578GO:GO:0009044GO:GO:0009505
GO:GO:0031222GO:GO:0045493GO:GO:0046556Gramene:AT1G02640.1
hmmpanther:PTHR30620hmmpanther:PTHR30620:SF4HOGENOM:HOG000031216InParanoid:Q94KD8
InterPro:IPR001764InterPro:IPR002772InterPro:IPR017853InterPro:IPR026891
InterPro:IPR026892KEGG:ath:AT1G02640OMA:YSIMENGPANTHER:PTHR30620
PaxDb:Q94KD8Pfam:PF00933Pfam:PF01915Pfam:PF14310
Pfam:Q94KD8PhylomeDB:Q94KD8PIR:D86156PRIDE:Q94KD8
PRINTS:PR00133PRO:PR:Q94KD8ProteinModelPortal:Q94KD8Proteomes:UP000006548
RefSeq:NP_563659.1SMART:SM01217SMR:Q94KD8STRING:3702.AT1G02640.1
SUPFAM:0046644SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT1G02640
tair10-symbols:ATBXL2tair10-symbols:BXL2UniGene:At.25322UniProt:Q94KD8
Coordinates (TAIR10) chr1:+:564293..567580
Molecular Weight (calculated) 82989.60 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.08
Length 768 amino acids
Sequence (TAIR10)
(BLAST)
001: MILHKMAFLA VILFFLISSS SVCVHSRETF ACDTKDAATA TLRFCQLSVP IPERVRDLIG RLTLAEKVSL LGNTAAAIPR LGIKGYEWWS EALHGVSNVG
101: PGTKFGGVYP AATSFPQVIT TVASFNASLW ESIGRVVSNE ARAMYNGGVG GLTYWSPNVN ILRDPRWGRG QETPGEDPVV AGKYAASYVR GLQGNDRSRL
201: KVAACCKHFT AYDLDNWNGV DRFHFNAKVS KQDIEDTFDV PFRMCVKEGN VASIMCSYNQ VNGVPTCADP NLLKKTIRNQ WGLNGYIVSD CDSVGVLYDT
301: QHYTGTPEEA AADSIKAGLD LDCGPFLGAH TIDAVKKNLL RESDVDNALI NTLTVQMRLG MFDGDIAAQP YGHLGPAHVC TPVHKGLALE AAQQGIVLLK
401: NHGSSLPLSS QRHRTVAVIG PNSDATVTMI GNYAGVACGY TSPVQGITGY ARTIHQKGCV DVHCMDDRLF DAAVEAARGA DATVLVMGLD QSIEAEFKDR
501: NSLLLPGKQQ ELVSRVAKAA KGPVILVLMS GGPIDISFAE KDRKIPAIVW AGYPGQEGGT AIADILFGSA NPGGKLPMTW YPQDYLTNLP MTEMSMRPVH
601: SKRIPGRTYR FYDGPVVYPF GHGLSYTRFT HNIADAPKVI PIAVRGRNGT VSGKSIRVTH ARCDRLSLGV HVEVTNVGSR DGTHTMLVFS APPGGEWAPK
701: KQLVAFERVH VAVGEKKRVQ VNIHVCKYLS VVDRAGNRRI PIGDHGIHIG DESHTVSLQA STLGVIKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)