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AT1G02620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.903
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1); Has 4733 Blast hits to 4733 proteins in 333 species: Archae - 0; Bacteria - 0; Metazoa - 2238; Fungi - 747; Plants - 975; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YIKIeggNOG:KOG0077EMBL:CP002684EnsemblPlants:AT1G02620EnsemblPlants:AT1G02620.1entrez:839269Gene3D:3.40.50.300
GeneID:839269GO:GO:0005525GO:GO:0005622GO:GO:0006886Gramene:AT1G02620.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF170
HOGENOM:HOG000163690InParanoid:Q3E6Q3InterPro:IPR006687InterPro:IPR006689InterPro:IPR027417KEGG:ath:AT1G02620KO:K07953
OMA:AYDQERFPaxDb:Q3E6Q3Pfam:PF00025Pfscan:PS51422PhylomeDB:Q3E6Q3PRIDE:Q3E6Q3PRINTS:PR00328
PROSITE:PS51422ProteinModelPortal:Q3E6Q3Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170RefSeq:NP_171762.1
SMR:Q3E6Q3STRING:3702.AT1G02620.1SUPFAM:SSF52540TAIR:AT1G02620UniGene:At.42590UniProt:Q3E6Q3
Coordinates (TAIR10) chr1:+:557092..557668
Molecular Weight (calculated) 13826.70 Da
IEP (calculated) 4.69
GRAVY (calculated) 0.04
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPLTRVLIL VEWFSQVDAL VYLVDAYDQE RFAESKKELD ALLSDESLAT VPFLILGNKI DIPYAASEDE LRFHLGLSNF TTGKGKVNLT DSNVRPLEVF
101: MCSIVRKMGY GEGFKWLSQY IK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)