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AT1G02400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.650
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gibberellin 2-oxidase 6
Curator
Summary (TAIR10)
Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins.
Computational
Description (TAIR10)
gibberellin 2-oxidase 6 (GA2OX6); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 4 (TAIR:AT1G47990.1); Has 8143 Blast hits to 8109 proteins in 973 species: Archae - 0; Bacteria - 1087; Metazoa - 68; Fungi - 840; Plants - 4773; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).
Protein Annotations
BRENDA:1.14.11.13EC:1.14.11.13eggNOG:COG3491eggNOG:KOG0143EMBL:AC064879EMBL:AK221432EMBL:AK228830
EMBL:AY859741EMBL:BT014886EMBL:CP002684EnsemblPlants:AT1G02400EnsemblPlants:AT1G02400.1entrez:839508Gene3D:2.60.120.330
GeneID:839508Genevisible:Q9FZ21GO:GO:0009639GO:GO:0009686GO:GO:0045487GO:GO:0046872GO:GO:0052634
Gramene:AT1G02400.1gramene_pathway:1.14.11.-gramene_pathway:1.14.11.13gramene_pathway:PWY-102hmmpanther:PTHR10209hmmpanther:PTHR10209:SF183HOGENOM:HOG000276735
InParanoid:Q9FZ21InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT1G02400KO:K04125OMA:PRMSAMY
PaxDb:Q9FZ21Pfam:PF03171Pfam:PF14226Pfam:Q9FZ21Pfscan:PS51471PhylomeDB:Q9FZ21PIR:D86154
PRIDE:Q9FZ21PRO:PR:Q9FZ21PROSITE:PS51471ProteinModelPortal:Q9FZ21Proteomes:UP000006548RefSeq:NP_171742.1SMR:Q9FZ21
STRING:3702.AT1G02400.1SUPFAM:SSF51197TAIR:AT1G02400tair10-symbols:ATGA2OX4tair10-symbols:ATGA2OX6tair10-symbols:DTA1tair10-symbols:GA2OX6
UniGene:At.42605UniPathway:UPA00390UniProt:Q9FZ21
Coordinates (TAIR10) chr1:+:486964..489391
Molecular Weight (calculated) 36839.90 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.32
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLPSSTPLQ TTGKKTISSP EYNFPVIDFS LNDRSKLSEK IVKACEVNGF FKVINHGVKP EIIKRFEHEG EEFFNKPESD KLRAGPASPF GYGCKNIGFN
101: GDLGELEYLL LHANPTAVAD KSETISHDDP FKFSSATNDY IRTVRDLACE IIDLTIENLW GQKSSEVSEL IRDVRSDSIL RLNHYPPAPY ALSGVGQIGF
201: GEHSDPQILT VLRSNDVDGL EICSRDGLWI PIPSDPTCFF VLVGDCLQAL TNGRFTSVRH RVLANTAKKP RMSAMYFAAP PLEAKISPLP KMVSPENPRR
301: YNSFTWGDYK KATYSLRLDV PRLEFFKTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)