suba logo
AT1G02340.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.
Computational
Description (TAIR10)
LONG HYPOCOTYL IN FAR-RED (HFR1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2); Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 1707; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24535eggNOG:ENOG410JW88eggNOG:ENOG4110567EMBL:AC064879EMBL:AF288287EMBL:AF323182EMBL:AF324245
EMBL:AK117248EMBL:CP002684EnsemblPlants:AT1G02340EnsemblPlants:AT1G02340.1entrez:839300Gene3D:4.10.280.10GeneID:839300
Genevisible:Q9FE22GO:GO:0003677GO:GO:0003700GO:GO:0003712GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0009585GO:GO:0009642GO:GO:0009738GO:GO:0009785Gramene:AT1G02340.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF87
HOGENOM:HOG000112891InParanoid:Q9FE22IntAct:Q9FE22InterPro:IPR011598iPTMnet:Q9FE22KEGG:ath:AT1G02340MINT:MINT-7556342
OMA:CHKTDKVPaxDb:Q9FE22Pfam:PF00010Pfam:Q9FE22Pfscan:PS50888PhylomeDB:Q9FE22PIR:G86153
PRIDE:Q9FE22PRO:PR:Q9FE22PROSITE:PS50888ProteinModelPortal:Q9FE22Proteomes:UP000006548RefSeq:NP_563650.1SMART:SM00353
SMR:Q9FE22STRING:3702.AT1G02340.1SUPFAM:SSF47459TAIR:AT1G02340tair10-symbols:FBI1tair10-symbols:HFR1tair10-symbols:REP1
tair10-symbols:RSF1UniGene:At.24795UniProt:Q9FE22
Coordinates (TAIR10) chr1:-:465933..467685
Molecular Weight (calculated) 33616.90 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.71
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD HDQTDNYLQI VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)