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AT1G02330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTBJeggNOG:KOG3345EMBL:CP002684EnsemblPlants:AT1G02330EnsemblPlants:AT1G02330.1entrez:839367GeneID:839367
GO:GO:0010099GO:GO:0016607GO:GO:0055121GO:GO:0080022GO:GO:1904667Gramene:AT1G02330.1hmmpanther:PTHR13486
hmmpanther:PTHR13486:SF2InParanoid:F4HVZ5InterPro:IPR010756iPTMnet:F4HVZ5KEGG:ath:AT1G02330ncoils:CoilOMA:KRLMGRP
PANTHER:PTHR13486PaxDb:F4HVZ5Pfam:PF07052PRIDE:F4HVZ5ProteinModelPortal:F4HVZ5Proteomes:UP000006548RefSeq:NP_563649.1
STRING:3702.AT1G02330.1TAIR:AT1G02330UniGene:At.16090UniProt:F4HVZ5
Coordinates (TAIR10) chr1:-:462202..463521
Molecular Weight (calculated) 32351.00 Da
IEP (calculated) 6.62
GRAVY (calculated) -1.18
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPKRNFRKR SFEEEEEDND VNKAAISEEE EKRRLALEEV KFLQKLRERK LGIPALSSTA QSSIGKVKPV EKTETEGEKE ELVLQDTFAQ ETAVLIEDPN
101: MVKYIEQELA KKRGRNIDDA EEVENELKRV EDELYKIPDH LKVKKRSSEE SSTQWTTGIA EVQLPIEYKL KNIEETEAAK KLLQERRLMG RPKSEFSIPS
201: SYSADYFQRG KDYAEKLRRE HPELYKDRGG PQADGEAAKP STSSSTNNNA DSGKSRQAAT DQIMLERFRK RERNRVMRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)