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AT1G02305.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1); Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51; Bacteria - 161; Metazoa - 3268; Fungi - 4; Plants - 1732; Viruses - 146; Other Eukaryotes - 2122 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G02305-MONOMEReggNOG:COG4870eggNOG:KOG1543EMBL:AF428337EMBL:AY039887EMBL:BT002227EMBL:CP002684
EnsemblPlants:AT1G02305EnsemblPlants:AT1G02305.1entrez:839538GeneID:839538GO:GO:0004197GO:GO:0005773GO:GO:0050790
Gramene:AT1G02305.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF367HOGENOM:HOG000241341IntAct:Q93VC9InterPro:IPR000169InterPro:IPR000668
InterPro:IPR012599InterPro:IPR013128InterPro:IPR025660KEGG:ath:AT1G02305KO:K01363MEROPS:C01.049OMA:IMGGHAV
PANTHER:PTHR12411Pfam:PF00112Pfam:PF08127PhylomeDB:Q93VC9PRINTS:PR00705PRO:PR:Q93VC9ProMEX:Q93VC9
PROSITE:PS00139PROSITE:PS00639Proteomes:UP000006548RefSeq:NP_563648.1scanprosite:PS00139scanprosite:PS00639SMART:SM00645
SMR:Q93VC9STRING:3702.AT1G02305.1SUPFAM:SSF54001TAIR:AT1G02305TMHMM:TMhelixUniGene:At.23486UniGene:At.42610
UniGene:At.43952UniProt:Q93VC9
Coordinates (TAIR10) chr1:+:455816..457974
Molecular Weight (calculated) 40035.30 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.22
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MADNCIRLLH SASVFFCLGL LISSFNLLQG IAAENLSKQK LTSWILQNEI VKEVNENPNA GWKASFNDRF ANATVAEFKR LLGVKPTPKT EFLGVPIVSH
101: DISLKLPKEF DARTAWSQCT SIGRILDQGH CGSCWAFGAV ESLSDRFCIK YNMNVSLSVN DLLACCGFLC GQGCNGGYPI AAWRYFKHHG VVTEECDPYF
201: DNTGCSHPGC EPAYPTPKCA RKCVSGNQLW RESKHYGVSA YKVRSHPDDI MAEVYKNGPV EVAFTVYEDF AHYKSGVYKH ITGTNIGGHA VKLIGWGTSD
301: DGEDYWLLAN QWNRSWGDDG YFKIRRGTNE CGIEHGVVAG LPSDRNVVKG ITTSDDLLVS SF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)