AT1G02300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51; Bacteria - 96; Metazoa - 3215; Fungi - 4; Plants - 1554; Viruses - 146; Other Eukaryotes - 2061 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:453288..455376 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42265.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSCCIRLH LLASVFLLLF SSFNLQGIAA ENLSKQKLTS LILQNEIVKE VNENPNAGWK AAFNDRFANA TVAEFKRLLG VIQTPKTAYL GVPIVRHDLS 101: LKLPKEFDAR TAWSHCTSIR RILVGYILNN VLLWSTITLW FWFLLGHCGS CWAFGAVESL SDRFCIKYNL NVSLSANDVI ACCGLLCGFG CNGGFPMGAW 201: LYFKYHGVVT QECDPYFDNT GCSHPGCEPT YPTPKCERKC VSRNQLWGES KHYGVGAYRI NPDPQDIMAE VYKNGPVEVA FTVYEDFAHY KSGVYKYITG 301: TKIGGHAVKL IGWGTSDDGE DYWLLANQWN RSWGDDGYFK IRRGTNECGI EQSVVAGLPS EKNVFKGITT SDDLLVSSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)