AT1G02270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.597 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Calcium-binding endonuclease/exonuclease/phosphatase family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2); Has 514 Blast hits to 514 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 214; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:443301..446197 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55477.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.85 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQSHQNRSRL SLILRSRFIP SFSSPLSLFV VLAAVPLPIY FSGLLSGRNN KPLSVMRLNS NLASSMVESN ISCTTFNILA PIYKRVDQKN HSTRESDFRT 101: LWLARNQRIL DLLLHQRSSV ICLQEVWVGN EELVNMYHHQ LSSSGYTIYQ LARTNSRGDG LLTAIHKDHF KVVNYRELLF NDFGDRVAQL LHVKTVIPFP 201: LNGKQDVQQE VIIVNTHLLF PHDSSLSIVR LHQVYKILEY LEAYQKENKL NHMPIILCGD WNGSKRGHVY KFLRSQGFIS SYDDAHQYTD SDAHRWVSHR 301: NHRGNICGVD FIWLCNPSDS RKPLRTSWVE AVFSIIKYQL HKASIAEDDA FTFLGAKNHS DSLTYSDFCL ALQKVNLTGI PHGLSFEETK ELWVRADLDG 401: NGVFDYEELK KIWNMTMVNQ PGNCKESVME SKKEEGEDEA IGLKVNKAIL FPQEAEKGLW PENYNISDHA CLTVQFSPVK MLCS |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)