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AT1G02220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 3 (NAC003); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 48 (TAIR:AT3G04420.1); Has 2600 Blast hits to 2593 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2598; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB493423EMBL:BT020269EMBL:BT022063EMBL:CP002684EMBL:U89959EnsemblPlants:AT1G02220EnsemblPlants:AT1G02220.1
entrez:839476GeneID:839476Genevisible:Q5PP28GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0044212
Gramene:AT1G02220.1HOGENOM:HOG000237406InParanoid:Q5PP28InterPro:IPR003441iPTMnet:Q5PP28KEGG:ath:AT1G02220OMA:EWETWLN
PaxDb:Q5PP28Pfam:PF02365Pfam:Q5PP28Pfscan:PS51005PhylomeDB:Q5PP28PRO:PR:Q5PP28PROSITE:PS51005
ProteinModelPortal:Q5PP28Proteomes:UP000006548RefSeq:NP_171725.1SMR:Q5PP28STRING:3702.AT1G02220.1SUPFAM:SSF101941TAIR:AT1G02220
tair10-symbols:ANAC003tair10-symbols:NAC003UniGene:At.70442UniProt:Q5PP28
Coordinates (TAIR10) chr1:-:428902..430567
Molecular Weight (calculated) 45155.00 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.79
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: METPVGLRFC PTDEEIVVDY LWPKNSDRDT SHVDRFINTV PVCRLDPWEL PCQSRIKLKD VAWCFFRPKE NKYGRGDQQM RKTKSGFWKS TGRPKPIMRN
101: RQQIGEKKIL MFYTSKESKS DWVIHEYHGF SHNQMMMTYT LCKVMFNGGM REKSSSSPSS SGVSGIEQSR RDSLIPQLVN NSEGSSLHRE DPSQFGDVLQ
201: EAPIEDAKLT EELVKWLMND EDDAQIEDAI PIEEWETWLN DIDDAKEKSI MFMHDNRSDY RPPNSLTGVF SDDVSSDDND SDLLTPKTNS IQTSSTCDSF
301: GSSNHRIDQI KDLQESPTST INLVSLTQEV SQALITSIDT AEKKKNPYDD AQGTEIGEHK LGQETIKKKR AGFFHRMIQK FVKKIHLCSS ISRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)