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AT1G02170.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At1g02170-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : metacaspase 1
Curator
Summary (TAIR10)
Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain
Computational
Description (TAIR10)
metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
Protein Annotations
EC:3.4.22.-eggNOG:ENOG410Y41CeggNOG:KOG1546EMBL:AY219826EMBL:AY322525EMBL:CP002684EMBL:U89959
EnsemblPlants:AT1G02170EnsemblPlants:AT1G02170.1entrez:839561Gene3D:3.40.50.1460GeneID:839561Genevisible:Q7XJE6GO:GO:0004197
GO:GO:0006952GO:GO:0043068Gramene:AT1G02170.1hmmpanther:PTHR31773hmmpanther:PTHR31773:SF11HOGENOM:HOG000240108InParanoid:Q7XJE6
IntAct:Q7XJE6InterPro:IPR005735InterPro:IPR029030InterPro:IPR033180iPTMnet:Q7XJE6KEGG:ath:AT1G02170MEROPS:C14.047
OMA:CGISYRFPANTHER:PTHR31773:SF11PaxDb:Q7XJE6Pfam:PF00656Pfam:PF06943Pfam:Q7XJE6PhylomeDB:Q7XJE6
PRIDE:Q7XJE6PRO:PR:Q7XJE6ProteinModelPortal:Q7XJE6Proteomes:UP000006548RefSeq:NP_171719.2SMR:Q7XJE6STRING:3702.AT1G02170.1
SUPFAM:SSF52129TAIR:AT1G02170tair10-symbols:ATMC1tair10-symbols:ATMCPB1tair10-symbols:LOL3tair10-symbols:MC1tair10-symbols:MCP1B
TIGRfam:TIGR01053TIGRFAMs:TIGR01053UniGene:At.10711UniGene:At.69983UniProt:Q7XJE6
Coordinates (TAIR10) chr1:+:411883..413426
Molecular Weight (calculated) 39794.60 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.28
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MYPPPPSSIY APPMLVNCSG CRTPLQLPSG ARSIRCALCQ AVTHIADPRT APPPQPSSAP SPPPQIHAPP GQLPHPHGRK RAVICGISYR FSRHELKGCI
101: NDAKCMRHLL INKFKFSPDS ILMLTEEETD PYRIPTKQNM RMALYWLVQG CTAGDSLVFH YSGHGSRQRN YNGDEVDGYD ETLCPLDFET QGMIVDDEIN
201: ATIVRPLPHG VKLHSIIDAC HSGTVLDLPF LCRMNRAGQY VWEDHRPRSG LWKGTAGGEA ISISGCDDDQ TSADTSALSK ITSTGAMTFC FIQAIERSAQ
301: GTTYGSLLNS MRTTIRNTGN DGGGSGGVVT TVLSMLLTGG SAIGGLRQEP QLTACQTFDV YAKPFTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)