suba logo
AT1G02140.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mago nashi family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube guidance, sex determination, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 476 Blast hits to 476 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 96; Plants - 76; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
BioGrid:22800eggNOG:ENOG4111FJ7eggNOG:KOG3392EMBL:AY065157EMBL:AY087464EMBL:AY114602EMBL:CP002684
EMBL:U89959EnsemblPlants:AT1G02140EnsemblPlants:AT1G02140.1entrez:837560ExpressionAtlas:O23676Gene3D:3.30.1560.10GeneID:837560
Genevisible:O23676GO:GO:0005654GO:GO:0005730GO:GO:0008380GO:GO:0009507GO:GO:0009793GO:GO:0010183
GO:GO:0010628GO:GO:0016607GO:GO:0035145Gramene:AT1G02140.1hmmpanther:PTHR12638HOGENOM:HOG000207428InParanoid:O23676
IntAct:O23676InterPro:IPR004023KEGG:ath:AT1G02140KO:K12877OMA:KEDDTNWPANTHER:PTHR12638PaxDb:O23676
Pfam:O23676Pfam:PF02792PhylomeDB:O23676PIR:C86153PRIDE:O23676PRO:PR:O23676ProteinModelPortal:O23676
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72187Reactome:R-ATH-975957RefSeq:NP_171716.1SMR:O23676STRING:3702.AT1G02140.1
SUPFAM:SSF89817TAIR:AT1G02140tair10-symbols:HAP1tair10-symbols:MAGOtair10-symbols:MEE63UniGene:At.21578UniProt:A0A023T774
UniProt:O23676
Coordinates (TAIR10) chr1:-:403467..404401
Molecular Weight (calculated) 17458.80 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.40
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)