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AT1G02050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chalcone and stilbene synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LESS ADHESIVE POLLEN 6 (LAP6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, pollen exine formation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G00040.1); Has 6482 Blast hits to 6477 proteins in 1606 species: Archae - 0; Bacteria - 2500; Metazoa - 0; Fungi - 67; Plants - 3666; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G02050-MONOMERBioCyc:MetaCyc:AT1G02050-MONOMEREC:2.3.1.-eggNOG:COG3424eggNOG:ENOG410IIN2EMBL:BT030313EMBL:CP002684
EMBL:DQ062309EMBL:DQ062310EMBL:DQ062318EMBL:DQ062322EMBL:DQ062323EMBL:DQ062324EMBL:DQ062327
EMBL:DQ062328EMBL:DQ062331EMBL:DQ062336EMBL:DQ062339EMBL:U89959EnsemblPlants:AT1G02050EnsemblPlants:AT1G02050.1
entrez:839280Gene3D:3.40.47.10GeneID:839280Genevisible:O23674GO:GO:0005783GO:GO:0009813GO:GO:0010584
GO:GO:0030639GO:GO:0080110GO:GO:0090439Gramene:AT1G02050.1gramene_pathway:2.1.1.-gramene_pathway:PWY-6733hmmpanther:PTHR11877
hmmpanther:PTHR11877:SF25HOGENOM:HOG000245460InterPro:IPR001099InterPro:IPR011141InterPro:IPR012328InterPro:IPR016039KEGG:ath:AT1G02050
ncoils:CoilOMA:TVMSKEIPaxDb:O23674Pfam:O23674Pfam:PF00195Pfam:PF02797PhylomeDB:O23674
PIR:E86152PIRSF:PIRSF000451PRO:PR:O23674ProteinModelPortal:O23674Proteomes:UP000006548RefSeq:NP_171707.1SMR:O23674
STRING:3702.AT1G02050.1SUPFAM:SSF53901TAIR:AT1G02050tair10-symbols:LAP6UniGene:At.43436UniPathway:UPA00154UniProt:O23674
Coordinates (TAIR10) chr1:-:359164..360441
Molecular Weight (calculated) 43619.70 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.23
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)