suba logo
AT1G01970.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G19520.1); Has 15559 Blast hits to 6864 proteins in 176 species: Archae - 0; Bacteria - 16; Metazoa - 92; Fungi - 19; Plants - 15148; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).
Protein Annotations
BioGrid:24534eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC020622EMBL:AK227853EMBL:BT010352EMBL:CP002684
EnsemblPlants:AT1G01970EnsemblPlants:AT1G01970.1entrez:839299GeneID:839299Genevisible:Q9LPC4Gramene:AT1G01970.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF457HOGENOM:HOG000070464InParanoid:Q9LPC4IntAct:Q9LPC4InterPro:IPR002885KEGG:ath:AT1G01970OMA:IYAGSEV
PaxDb:Q9LPC4Pfam:PF01535Pfam:PF13812Pfam:Q9LPC4Pfscan:PS51375PhylomeDB:Q9LPC4PIR:F86151
PRIDE:Q9LPC4PRO:PR:Q9LPC4PROSITE:PS51375ProteinModelPortal:Q9LPC4Proteomes:UP000006548RefSeq:NP_171699.1SMR:Q9LPC4
STRING:3702.AT1G01970.1TAIR:AT1G01970TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.42625UniProt:Q9LPC4
Coordinates (TAIR10) chr1:+:338538..339905
Molecular Weight (calculated) 46080.00 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.12
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA
101: LMRQIICFSP EKGSFCDLLG AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ VEDAERTLLS MKNRGFLIDQ
201: VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG
301: ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE
401: FSSSQSQPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)