suba logo
AT1G01940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: plant U-box 49 (TAIR:AT5G67530.1); Has 17692 Blast hits to 17552 proteins in 2716 species: Archae - 108; Bacteria - 7521; Metazoa - 2867; Fungi - 1402; Plants - 1253; Viruses - 0; Other Eukaryotes - 4541 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G01940-MONOMEREC:5.2.1.8eggNOG:COG0652eggNOG:KOG0884EMBL:AC020622EMBL:AY568515EMBL:BT002879
EMBL:BT004403EMBL:CP002684EnsemblPlants:AT1G01940EnsemblPlants:AT1G01940.1entrez:839309Gene3D:2.40.100.10GeneID:839309
Genevisible:Q9LPC7GO:GO:0003755GO:GO:0005737GO:GO:0006457GO:GO:0042277Gramene:AT1G01940.1hmmpanther:PTHR11071
HOGENOM:HOG000065981InParanoid:Q9LPC7InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT1G01940
KO:K12734OMA:DAPKACEPANTHER:PTHR11071PaxDb:Q9LPC7Pfam:PF00160Pfam:Q9LPC7Pfscan:PS50072
PhylomeDB:Q9LPC7PIR:C86151PIRSF:PIRSF001467PRIDE:Q9LPC7PRINTS:PR00153PRO:PR:Q9LPC7PROSITE:PS00170
PROSITE:PS50072ProteinModelPortal:Q9LPC7Proteomes:UP000006548RefSeq:NP_171696.2scanprosite:PS00170SMR:Q9LPC7STRING:3702.AT1G01940.1
SUPFAM:SSF50891TAIR:AT1G01940UniGene:At.42627UniProt:Q9LPC7
Coordinates (TAIR10) chr1:+:323082..324719
Molecular Weight (calculated) 17504.00 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.31
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)