AT1G01930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger protein-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 1975 Blast hits to 1659 proteins in 367 species: Archae - 3; Bacteria - 303; Metazoa - 582; Fungi - 382; Plants - 105; Viruses - 11; Other Eukaryotes - 589 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:320041..322809 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65263.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.11 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTGAAATT EIGNPEYKQP RSIFDLTADF FDSCRLSNPS ETQSAFGPPK TFDPEEAEED KSSKDGVILD RWTCNTCKIE FLSLQDQRYH FKSDIHRLNI 101: KLSVAGKAIL KEEDVDELTS ESVQDYDVSS ISGSEDEAET RPPSFHFDAQ KGIDKKKLFF RLQSGDKVSI WKCLIMDDAE SVSFENDRGV SVDCCGSLVE 201: NEVTERLRNL IRENKDDRQM RVVLLASGGH FAGTVFNGKS VVAHKTFHRY VVRAKAGKKQ STKDASGRSI HSAGASLRRY NELALKKDIQ ELLASWKPYF 301: DGAACVFVHA PSSSRQLLFN GGKPYFSSQN CAVRNVPFTI RRPTFKESQR IYNQLTQIAH VTEEIFVNRP EVTKANTVVQ THNEDSGKTS RKEEPDETSS 401: SNIILEEPNR IEEDIEDGVT GTSTALHEAA KSGDCERVME FLEEGMDPCA KDERGRTPYM LANEKEVRNT FRRFMALNLE KWNWHDAKVP SPLTKEMEES 501: QAAKQAEKDA KQKARTKELK KLRKAREKKA QAEAAQAEKE KPISKVEEVR RAMAAQREKR AAAAERRMAS LNIQSSSSTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)