AT1G01920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.617 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SET domain-containing protein; BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 611 Blast hits to 608 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 239; Plants - 164; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:316204..319507 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64676.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAISEEEAKL ERFLDWLQVN GGELRGCNIK YSDSLKGFGI FASTSTQASD EVLLVVPLDL AITPMRVLQD PLLGPECQKM FEQGQVDDRF LMILFLTLER 101: LRINSSWKPY LDMLPTRFGN PLWFSDDDIL ELKGTNLYHA TELQKKKLLS LYHDKVEVLV TKLLILDGDS ESKVSFEHFL WANSVFWSRA LNIPLPHSFV 201: FPQSQDDTGE CTSTSESPET APVNSNEEKG KSLTSAQPAP SVGSGDTIWV EGLVPGIDFC NHDLKPVATW EVDGIGSVSR VPFSMYLLSV AQRPIPKKEI 301: SISYGNKGNE ELLYLYGFVI DNNPDDYLMI KEMLVNFVLT SVVTFNNGFI QVHYPVEAIP SIPFSDSKGQ LLEAQNAQLR CLLPKSVLNH GFFPRTTSVI 401: RESDEKETVR SCNFSWSGKR KMPTYMNKLV FPEDFMTGLR TIAMQEEEIY KVSAMLEELV ESRQGEQPSE TEVRMAVWEA CGDSGALQLL VDLLNSKMMK 501: LEENSGTEEQ DARLLEEACV LESHEESRDL DGRRMSRNKW SSVVYRRGQK QLTRLLLKEA EHALHLALSS DH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)