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AT1G01910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10350.1); Has 2854 Blast hits to 2413 proteins in 784 species: Archae - 172; Bacteria - 1905; Metazoa - 150; Fungi - 222; Plants - 105; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G01910-MONOMERBioCyc:ARA:GQT-274-MONOMERBioCyc:ARA:GQT-275-MONOMERBioCyc:ARA:GQT-277-MONOMEREC:3.6.-.-eggNOG:COG0003eggNOG:KOG2825
EMBL:AY051004EMBL:AY122993EMBL:CP002684EnsemblPlants:AT1G01910EnsemblPlants:AT1G01910.1EnsemblPlants:AT1G01910.2EnsemblPlants:AT1G01910.4
entrez:839305Gene3D:3.40.50.300GeneID:839305GO:GO:0005524GO:GO:0005783GO:GO:0006810GO:GO:0016887
GO:GO:0045048GO:GO:0046872Gramene:AT1G01910.1Gramene:AT1G01910.2Gramene:AT1G01910.4HAMAP:MF_03112hmmpanther:PTHR10803
hmmpanther:PTHR10803:SF3HOGENOM:HOG000197637InterPro:IPR016300InterPro:IPR025723InterPro:IPR027417InterPro:IPR027542ncoils:Coil
OMA:YEIDTHNPANTHER:PTHR10803Pfam:PF02374Proteomes:UP000006548Reactome:R-ATH-381038RefSeq:NP_001077445.1RefSeq:NP_563640.1
RefSeq:NP_849575.1STRING:3702.AT1G01910.1SUPFAM:SSF52540TAIR:AT1G01910TIGRfam:TIGR00345TIGRFAMs:TIGR00345UniGene:At.16996
UniGene:At.16997UniProt:Q949M9
Coordinates (TAIR10) chr1:-:313595..315831
Molecular Weight (calculated) 39672.80 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.13
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MAADLPEATV QNILDQESLK WVFVGGKGGV GKTTCSSILA ICLASVRSSV LIISTDPAHN LSDAFQQRFT KSPTLVQGFS NLFAMEVDPT VETDDMAGTD
101: GMDGLFSDLA NAIPGIDEAM SFAEMLKLVQ TMDYATIVFD TAPTGHTLRL LQFPATLEKG LSKLMSLKSR FGGLMTQMSR MFGMEDEFGE DALLGRLEGL
201: KDVIEQVNRQ FKDPDMTTFV CVCIPEFLSL YETERLVQEL AKFEIDTHNI IINQVLYDDE DVESKLLRAR MRMQQKYLDQ FYMLYDDFNI TKLPLLPEEV
301: TGVEALKAFS HKFLTPYHPT TSRSNVEELE RKVHTLRLQL KTAEEELERV KSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)