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AT1G01880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : 5'-3' exonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Protein Annotations
BioGrid:22614EC:3.1.-.-eggNOG:COG0258eggNOG:KOG2519EMBL:AC020622EMBL:CP002684EnsemblPlants:AT1G01880
EnsemblPlants:AT1G01880.1entrez:837373ExpressionAtlas:Q9LPD2Gene3D:3.40.50.1010GeneID:837373GO:GO:0003677GO:GO:0004519
GO:GO:0005634GO:GO:0006281GO:GO:0046872hmmpanther:PTHR11081hmmpanther:PTHR11081:SF23HOGENOM:HOG000243251InParanoid:Q9LPD2
IntAct:Q9LPD2InterPro:IPR006084InterPro:IPR006085InterPro:IPR006086InterPro:IPR008918InterPro:IPR020045InterPro:IPR029060
iPTMnet:Q9LPD2OMA:SKFGAFPPANTHER:PTHR11081PaxDb:Q9LPD2Pfam:PF00752Pfam:PF00867Pfam:Q9LPD2
PIR:F86150PRIDE:Q9LPD2PRINTS:PR00853PRO:PR:Q9LPD2ProteinModelPortal:Q9LPD2Proteomes:UP000006548RefSeq:NP_171691.2
SMART:SM00279SMART:SM00484SMART:SM00485SMR:Q9LPD2STRING:3702.AT1G01880.1SUPFAM:SSF47807SUPFAM:SSF88723
TAIR:AT1G01880UniGene:At.51453UniProt:Q9LPD2
Coordinates (TAIR10) chr1:-:306558..308991
Molecular Weight (calculated) 67196.30 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.39
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVGGNFWDL LRPYAQQQGF DFLRNKRVAV DLSFWIVQHE TAVKGFVLKP HLRLTFFRTI NLFSKFGAYP VFVVDGTPSP LKSQARISRF FRSSGIDTCN
101: LPVIKDGVSV ERNKLFSEWV RECVELLELL GIPVLKANGE AEALCAQLNS QGFVDACITP DSDAFLFGAM CVIKDIKPNS REPFECYHMS HIESGLGLKR
201: KHLIAISLLV GNDYDSGGVL GIGVDKALRI VREFSEDQVL ERLQDIGNGL QPAVPGGIKS GDDGEEFRSE MKKRSPHCSR CGHLGSKRTH FKSSCEHCGC
301: DSGCIKKPLG FRCECSFCSK DRDLREQKKT NDWWIKVCDK IALAPEFPNR KIIELYLSDG LMTGDGSSMS WGTPDTGMLV DLMVFKLHWD PSYVRKMLLP
401: MLSTIYLREK ARNNTGYALL CDQYEFHSIK CIKTRYGHQS FVIRWRKPKS TSGYSHSHSE PEESIVVLEE EEESVDPLDG LNEPQVQNDN GDCFLLTDEC
501: IGLVQSAFPD ETEHFLHEKK LRESKKKNVS EEETATPRAT TMGVQRSITD FYRSAKKAAA GQSIETGGSS KASAEKKRQA TSTSSSNLTK SVRRRLLFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)