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AT1G01860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23549413 (2013): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal RNA adenine dimethylase family protein
Curator
Summary (TAIR10)
dimethyladenosine transferase
Computational
Description (TAIR10)
PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228; Bacteria - 6144; Metazoa - 264; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.-eggNOG:COG0030eggNOG:KOG0820EMBL:AC009273EMBL:AC020622EMBL:AF051326EMBL:AK117412
EMBL:BT005097EMBL:CP002684EnsemblPlants:AT1G01860EnsemblPlants:AT1G01860.1entrez:839283Gene3D:1.10.8.100Gene3D:3.40.50.150
GeneID:839283Genevisible:O65090GO:GO:0000179GO:GO:0003723GO:GO:0009409GO:GO:0009507GO:GO:0016422
GO:GO:0080009Gramene:AT1G01860.1hmmpanther:PTHR11727hmmpanther:PTHR11727:SF11HOGENOM:HOG000227962InParanoid:O65090InterPro:IPR001737
InterPro:IPR011530InterPro:IPR020596InterPro:IPR020598InterPro:IPR023165InterPro:IPR029063KEGG:ath:AT1G01860OMA:FGNIPYY
PANTHER:PTHR11727PaxDb:O65090Pfam:PF00398Pfscan:PS51689PhylomeDB:O65090PIR:D86150PIR:E86150
PIR:T51591PRIDE:O65090PRO:PR:O65090PROSITE:PS01131PROSITE:PS51689ProteinModelPortal:O65090Proteomes:UP000006548
RefSeq:NP_171690.1scanprosite:PS01131SMART:SM00650SMR:O65090STRING:3702.AT1G01860.1SUPFAM:SSF53335TAIR:AT1G01860
tair10-symbols:PFC1TIGRfam:TIGR00755TIGRFAMs:TIGR00755UniGene:At.11298UniGene:At.26618UniProt:O65090
Coordinates (TAIR10) chr1:-:304439..306275
Molecular Weight (calculated) 38024.80 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.17
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNAVITSAT INCNSLSPSW TCGDNSPSKL LLGEISAALS RRRTVKVSCG KSSPDDYHST LKSLNSRGRF PRKSLGQHYM LNSDINDQLA SAADVKEGDF
101: VLEIGPGTGS LTNVLINLGA TVLAIEKDPH MVDLVSERFA GSDKFKVLQE DFVKCHIRSH MLSILETRRL SHPDSALAKV VSNLPFNIST DVVKLLLPMG
201: DIFSKVVLLL QDEAALRLVE PALRTSEYRP INILINFYSE PEYNFRVPRE NFFPQPKVDA AVVTFKLKHP RDYPDVSSTK NFFSLVNSAF NGKRKMLRKS
301: LQHISSSPDI EKALGVAGLP ATSRPEELTL DDFVKLHNVI ARE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)