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AT1G01840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1JNeggNOG:ENOG41118M5EMBL:AC009273EMBL:AY058133EMBL:AY097396EMBL:CP002684EnsemblPlants:AT1G01840
EnsemblPlants:AT1G01840.1entrez:839291GeneID:839291Gramene:AT1G01840.1hmmpanther:PTHR37697HOGENOM:HOG000153071KEGG:ath:AT1G01840
OMA:LVYQFHGPhylomeDB:Q9LQ71PIR:C86150Proteomes:UP000006548RefSeq:NP_563638.1STRING:3702.AT1G01840.1TAIR:AT1G01840
UniGene:At.11298UniGene:At.26618UniProt:Q9LQ71
Coordinates (TAIR10) chr1:+:303650..304108
Molecular Weight (calculated) 16943.00 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.47
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIEQVAEL ISSLEQATLM AQQIGTTVGQ NQLLQISSLR IAHQRLSAFL ASIPTAEAEK SFSSVEPMQL GEEEKGEAEP AEEERYSAIE KVEEKMRECF
101: IRNKRLKRPL SPSSAVVETS ATEERSGRDY GFDSDPHATK LRALDLIYQF HA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)