suba logo
AT1G01830.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AY059739EMBL:AY091273EMBL:CP002684EnsemblPlants:AT1G01830EnsemblPlants:AT1G01830.1
EnsemblPlants:AT1G01830.2EnsemblPlants:AT1G01830.3entrez:839264Gene3D:1.25.10.10GeneID:839264Gramene:AT1G01830.1Gramene:AT1G01830.2
Gramene:AT1G01830.3hmmpanther:PTHR23315hmmpanther:PTHR23315:SF97HOGENOM:HOG000239669InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024
KEGG:ath:AT1G01830OMA:ESKHNALPfam:PF00514Pfscan:PS50176PhylomeDB:Q93YW3PROSITE:PS50176Proteomes:UP000006548
RefSeq:NP_001077443.1RefSeq:NP_001077444.1RefSeq:NP_563637.1SMART:SM00185SMR:Q93YW3STRING:3702.AT1G01830.1SUPFAM:SSF48371
TAIR:AT1G01830UniGene:At.26641UniProt:Q93YW3
Coordinates (TAIR10) chr1:-:298717..300441
Molecular Weight (calculated) 61927.80 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.01
Length 574 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTMAELGTM GKFGAMAEEQ QVNQMIMDKQ SVEEWLSRVN SLIPSVLSKA KTVKKFTGRW KTIISKIEQI PACLSDLSSH PCFSKNKLCN EQLQSVAKTL
101: SEVIELAEQC STDKYEGKLR MQSDLDSLSG KLDLNLRDCG VLIKTGVLGE ATLPLYISSS SETPKISSLK ELLARLQIGH LESKHNALES LLGAMQEDEK
201: MVLMPLIGRA NVAALVQLLT ATSTRIREKA VNLISVLAES GHCDEWLISE GVLPPLVRLI ESGSLETKEK AAIAIQRLSM TEENAREIAG HGGITPLIDL
301: CKTGDSVSQA ASAAALKNMS AVSELRQLLA EEGIIRVSID LLNHGILLGS REHMAECLQN LTAASDALRE AIVSEGGVPS LLAYLDGPLP QQPAVTALRN
401: LIPSVNPEIW VALNLLPRLR HVLKSGSLGA QQAAASAICR FACSPETKRL VGESGCIPEI VKLLESKSNG CREAAAQAIA GLVAEGRIRR ELKKDGKSVL
501: TNLVMLLDSN PGNTAKKYAV AGLLGMSGSE KSKKMMVSYG AIGYLKKLSE MEVMGADKLL EKLERGKLRS FFHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)