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AT1G01820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxin 11c
Curator
Summary (TAIR10)
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
Computational
Description (TAIR10)
peroxin 11c (PEX11C); CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11D (TAIR:AT2G45740.3); Has 289 Blast hits to 289 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 41; Plants - 179; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:24492eggNOG:ENOG4111NS6eggNOG:KOG4186EMBL:AB022861EMBL:AC009273EMBL:AF332441EMBL:AJ520104
EMBL:AY064139EMBL:AY086844EMBL:AY097406EMBL:CP002684EnsemblPlants:AT1G01820EnsemblPlants:AT1G01820.1entrez:839257
GeneID:839257Genevisible:Q9LQ73GO:GO:0005777GO:GO:0005779GO:GO:0007031GO:GO:0009506GO:GO:0016559
GO:GO:0042802GO:GO:0044375Gramene:AT1G01820.1hmmpanther:PTHR12652hmmpanther:PTHR12652:SF16HOGENOM:HOG000029130InParanoid:Q9LQ73
InterPro:IPR008733KEGG:ath:AT1G01820OMA:KYENEQYPaxDb:Q9LQ73Pfam:PF05648Pfam:Q9LQ73PhylomeDB:Q9LQ73
PIR:A86150PRIDE:Q9LQ73PRO:PR:Q9LQ73Proteomes:UP000006548RefSeq:NP_563636.1STRING:3702.AT1G01820.1TAIR:AT1G01820
tair10-symbols:PEX11CUniGene:At.24237UniProt:Q9LQ73
Coordinates (TAIR10) chr1:-:296213..297723
Molecular Weight (calculated) 25913.90 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.02
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTLETTRAE LGLVVVYLNK AEARDKICRA IQYGSKFLSD GQPGTAQNVD KNTSLARKVF RLFKFVNDLH ALISPVPKGT PLPLVLLGKS KNALLSTFLF
101: LDQIVWLGRT GIYKDKERAE ILGRISLFCW MGSSVCTSLV EVGELGRLSA SIKKLEKEIG NKDKHQNEQY RAKVEKSNER SLALIKAGMD VVVAFGLLQL
201: APKKVTPRVT GAFGFASSLI SCYQLLPSHP KSKMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)