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AT1G01800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G61220.1); Has 66869 Blast hits to 66825 proteins in 3161 species: Archae - 673; Bacteria - 45998; Metazoa - 3911; Fungi - 3425; Plants - 2362; Viruses - 0; Other Eukaryotes - 10500 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G01800-MONOMEReggNOG:COG1028eggNOG:KOG1208EMBL:AF370343EMBL:AK317147EMBL:AY133796EMBL:CP002684
EnsemblPlants:AT1G01800EnsemblPlants:AT1G01800.1entrez:839259ExpressionAtlas:Q94K30Gene3D:3.40.50.720GeneID:839259GO:GO:0009505
GO:GO:0016491Gramene:AT1G01800.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF442IntAct:Q94K30InterPro:IPR002347InterPro:IPR016040
OMA:GVKRMCEPANTHER:PTHR24322Pfam:PF00106PhylomeDB:Q94K30PRINTS:PR00080PRINTS:PR00081Proteomes:UP000006548
Reactome:R-ATH-2162123RefSeq:NP_563635.1SMR:Q94K30STRING:3702.AT1G01800.1SUPFAM:SSF51735TAIR:AT1G01800UniGene:At.14907
UniProt:Q94K30
Coordinates (TAIR10) chr1:+:293396..294888
Molecular Weight (calculated) 31662.00 Da
IEP (calculated) 5.03
GRAVY (calculated) 0.02
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPRVAVVT GSNKGIGFEI CRQLANNGIT VVLTARDENK GLAAVQKLKT ENGFSDQAIS FHPLDVSNPD TIASLAAFVK TRFGKLDILV NNAGVGGANV
101: NVDVLKAQIA EAGAPTDISK IMSDTYEIVE ECVKTNYYGV KRMCEAMIPL LQSSDSPRIV SIASTMGKLE NVSNEWAKGV LSDAENLTEE KIDEVINEYL
201: KDYKEGALQV KGWPTVMSGY ILSKAAVIAL TRVLAKRHKS FIINSVCPGF VNTEINFNTG ILSVEEGAAS PVKLALVPNG DPSGLFFDRA NVSNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)